Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00486 ATGCCTAAGCAAATACACGAGATTAAGGATTTCCTTCTCACTGCTCGAAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTTTACACACTCTGTGTTTTTGACGTAGAGAAAGCTGATAAATTGAAGCAATCACTTCCTCCAGGTTTGAATGTTCAAGACCTGTAA 210 0.4238 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSLPPGLNVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00486 69 Gene3D - 1 69 IPR038464 -
Car01g00486 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Car01g00486 69 PANTHER - 1 69 - -
Car01g00486 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00486 Car-Chr1 3846985 3848480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00486 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 1.10e-43 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00486 K02923 - pda:103707748 136.732