Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00481 ATGGCACACAACACTAAGGTGCCTAATTCTTCATCTACAAAATTACAACATGATGAAATTAAAGACAACAAATCCAACCAAAAAGTTCCATTCTACATGCTCTTCACCTTTGCCGATCGTATTGATGTAACATTGATGATCATTGGCATTATCTCTGCCGTGGCTAATGGATTAACACAACCTTTCATCACACTCATTTTTGGAAAACTCATCAACACTTTTGGCTCCACCGTTCCATCACACATTGTCAAACAAGTTTCTAAGGTATCTTTGTTGTATGTTTACCTAGCTATTGGGTCAGGAATAGCATCATTTCTACAGGTGTCATGTTGGGTGGTGACAGGAGAGAGACAAGCTGCGAGGATTCGTAGCTTGTACTTGAAAACCATATTAAAGCAAGATATTGCATTCTTTGACACTGAAACAAACACAGGAGAGGTGATTGGTAGAATGTCTGGTGACACAATTCTCATTAGAGATGCAATGGGAGAAAAGGTCGGGAAGTTTGTTCAACTTGCTTCAACTTTTTTGGGTGGATTTGTGATTGCATTTATAAAAGGATGGCGACTAGCTGTAGTTTTACTTGCATGTATACCTTGTGTTGTCATTGCTGGTGGTTTCATTTTCCTGTTGGCTGCTAAAATGTCCAGTCGTGGACAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGATCAAACAGTCGTAGGGATTAGAACGGTTGCATCTTTTACTGGGGAGAAAAAAGCCATAGAGAATTATAATAGCAAGTTAAAAGTTGCTTACAAGACAATGGTTCAACAAGGGATCATCTCTGGGTTAGGTGTGGGAATTCTTCTCTTGATTGTCTTCTGCACTTATGGCCTTGCCATGTGGTATGGTTCCAAACTAGTTGTTGAGAGAGGATACAATGGTGGAACAATCATAACTGTTATCATAGCTCTTATGACTGGTGGAATATCATTGGGTCAGACATCTCCAAGTGTAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCTAAAATTGATGCATATGAAACAAGTGGTGTTGTCTTGGAAGACATAAAGGGAGATATTGAACTTAAAGACGTTCACTTTAGATACCCTGCAAGGCCAGATGTGCAGATCTTTGCTGGATTCTCAATGTTTGTTCCAAGTGGTACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCAACTGTAATCAATTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGCGTGAACATGAAGAATTTTCAAGTTAGATGGATAAGAGAACAGATTGGACTTGTTGGTCAAGAACCTGTCTTGTTTACAACTACTATCAGAGAGAACATAGCATATGGGAAAGAAGGGGCAACTGATGAGGAGATAACAACTGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGTTGCCTCAGGGTCTGGACACAATGACAGGGCATAATGGGACTCAACTTTCTGGTGGCCAAAAGCAAAGAATTGCAATTGCAAGAGCAATACTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGCGTTGTTCAAGAAGCATTAGAAAAAATTATGTTAAAAAGGACTACTATTGTTGTTGCGCATCGTTTGACAACTATCAGAAATGCTGACACAATAGCAGTGGTTCATCAAGGAAAAATTGTGGAGAGAGGAACTCATAACGAGTTAACCATGGATGCTAATGGTGCTTATTCTCAACTTATTCGTCTTCAAGAAGGAGAAAAAGAAGCTGAAGGTAGCAGAAATATAGATAGTCACAATTTAAATATAGATAGTCACATGGCTGGATCTTCCACTCAGAGAACTTCCTTTGTGAGATCAATAAGCCAAACTTCATCGGCAAGTCTTAGGCATTCCCAATCACTTCGAGGCTTGTCTGCAGAAATAGAATTAACAGATATTAAACAAGGCCAACTTGATAACAAGAGAAAACCCAATAGGGTATCTATAATGCGTTTAGCCAAGTTGAACAAGCCTGAGGTTCCTGTCATGCTGCTTGGAACCATTGCTGCAATAATAAACGGCGTCCTGTTCCCGATGTTCGGCCTCTTGTTTTCATCAGCCATTAGTGTGTTTTACAAACCTCCAGAACAGCAGAGGAAAGAGTCCAGGTTCTGGTCACTTTTATATGTAGGTTTGGGTTTGGTTAGTCTAGTGGTTTTACCACTGCAGAATTACTTATTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTCGTTGACATTTGAAAAAATTGTGCACCAAGAAATTAGCTGGTTTGATGAACCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGATTATCTACCGACGCTTCAACTGTGAAAGGTCTTGTTGGTGACACCTTGGCCCTAATTGTGCAGAACATATCAACGCTCACAACTGGTCTAGTTATAGCGTTCACTGCTAATTGGATTCTTGCTTTTGTAGTTTTGATTGTGTCACCTATGGTCCTTATTCAAGGTTTACTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTGATGTATGAAGAGGCAAGTCAGGTGGCAAGTGATGCTGTTAGCAGCATCAGAACTGTTGCATCATTTTGTGCAGAACCAAAGGTGATGGACATGTATAGGAAAAAGTGTTTAGGACCACAGAATCACGGTGTTCGCTTGGGGCTTGTTAGTGGTGTAGGATTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTGTTTTAGTGCAACACGGGAAAGCAACTTTTCCAGAGGTTTTAAGGGTTTTCTTTTGTTTAACAATGACAGCAATGGCCGTTTCCCAGTCTAGTGCATTGGCACCAGACACTAACAAGGCCAAAGATTCTACAGCTTCAATATTTGAAATTCTTGACAGTGACCCTACTATTGACTCCAGTAGCAATGAGGGTGTAACATTAGAAACAGTTACAGGTGATATTGAACTTCAACATGTCAACTTTAATTACCCAACAAGGCCTCACATTCAAATTTTCAAAGATTTAAGCATAAGCATCCCATCTGCAAAGACTGTTGCATTAGTCGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAACCTGTTAGAGAGATTTTATGACCCTGATTTTGGACATGTATTATTAGATGGAGTGGATATTAAAAAGTTAAGACTAAGCTGGCTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCTTCAGAGGATGAAATCATTGCAGCAGCCCAAGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACATCTGTTGGAGAAAGAGGCACACAACTATCCGGAGGACAAAAGCAGCGTATAGCTATTGCAAGAGCCTTGCTGAAAAATCCAAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCTGAGTCGGAGCGTATAGTTCAAGAGGCACTAGATAGAGTGAGTGTGAACAGAACAACTGTGGTGGTGGCTCATCGTCTTACGACAATTCGAGGGGCTGATACTATAGCAGTAATTAAAAATGGTGTGGTTGCTGAAAAGGGAAGACATGATGTGTTGGTGAAGATTACTGATGGGATTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATCCTAA 3795 0.4018 MAHNTKVPNSSSTKLQHDEIKDNKSNQKVPFYMLFTFADRIDVTLMIIGIISAVANGLTQPFITLIFGKLINTFGSTVPSHIVKQVSKVSLLYVYLAIGSGIASFLQVSCWVVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIRDAMGEKVGKFVQLASTFLGGFVIAFIKGWRLAVVLLACIPCVVIAGGFIFLLAAKMSSRGQAAYAEAGNVVDQTVVGIRTVASFTGEKKAIENYNSKLKVAYKTMVQQGIISGLGVGILLLIVFCTYGLAMWYGSKLVVERGYNGGTIITVIIALMTGGISLGQTSPSVNAFAAGQAAAYKMFETIKRKPKIDAYETSGVVLEDIKGDIELKDVHFRYPARPDVQIFAGFSMFVPSGTTTALVGQSGSGKSTVINLLERFYDPDAGEVLIDGVNMKNFQVRWIREQIGLVGQEPVLFTTTIRENIAYGKEGATDEEITTAITLANAKKFIDKLPQGLDTMTGHNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEKIMLKRTTIVVAHRLTTIRNADTIAVVHQGKIVERGTHNELTMDANGAYSQLIRLQEGEKEAEGSRNIDSHNLNIDSHMAGSSTQRTSFVRSISQTSSASLRHSQSLRGLSAEIELTDIKQGQLDNKRKPNRVSIMRLAKLNKPEVPVMLLGTIAAIINGVLFPMFGLLFSSAISVFYKPPEQQRKESRFWSLLYVGLGLVSLVVLPLQNYLFGIAGGKLIERIRSLTFEKIVHQEISWFDEPANSSGAVGARLSTDASTVKGLVGDTLALIVQNISTLTTGLVIAFTANWILAFVVLIVSPMVLIQGLLQMKFLKGFSADAKVMYEEASQVASDAVSSIRTVASFCAEPKVMDMYRKKCLGPQNHGVRLGLVSGVGFGFSFLALYCTNAFTFYIGSVLVQHGKATFPEVLRVFFCLTMTAMAVSQSSALAPDTNKAKDSTASIFEILDSDPTIDSSSNEGVTLETVTGDIELQHVNFNYPTRPHIQIFKDLSISIPSAKTVALVGESGSGKSTVINLLERFYDPDFGHVLLDGVDIKKLRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGASEDEIIAAAQAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARALLKNPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLVKITDGIYASLVALHSSAS 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00481 1264 CDD ABC_MTABC3_MDL1_MDL2 1021 1257 - -
Car01g00481 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00481 1264 Pfam ABC transporter 389 535 IPR003439 GO:0005524
Car01g00481 1264 Pfam ABC transporter 1040 1189 IPR003439 GO:0005524
Car01g00481 1264 Gene3D - 366 650 IPR027417 -
Car01g00481 1264 SUPERFAMILY ABC transporter transmembrane region 34 349 IPR036640 GO:0005524|GO:0016021
Car01g00481 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 606 IPR027417 -
Car01g00481 1264 Pfam ABC transporter transmembrane region 46 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00481 1264 Pfam ABC transporter transmembrane region 699 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00481 1264 SUPERFAMILY ABC transporter transmembrane region 682 1002 IPR036640 GO:0005524|GO:0016021
Car01g00481 1264 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524
Car01g00481 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1258 IPR003439 GO:0005524
Car01g00481 1264 Gene3D - 1011 1263 IPR027417 -
Car01g00481 1264 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 1261 IPR039421 -
Car01g00481 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1258 IPR027417 -
Car01g00481 1264 CDD ABC_6TM_Pgp_ABCB1_D2_like 689 1004 - -
Car01g00481 1264 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 24 1261 - -
Car01g00481 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Car01g00481 1264 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 329 - -
Car01g00481 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00481 1264 MobiDBLite consensus disorder prediction 1 21 - -
Car01g00481 1264 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Car01g00481 1264 Gene3D ABC transporter type 1, transmembrane domain 91 995 IPR036640 GO:0005524|GO:0016021
Car01g00481 1264 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Car01g00481 1264 SMART AAA_5 1048 1235 IPR003593 -
Car01g00481 1264 SMART AAA_5 395 581 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00481 Car-Chr1 3816882 3822504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00481 29 1260 Calmodulin-binding Proteins AT2G36910 44.631 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00481 K05658 - gmx:100801771 1920.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00481 01 3816882 3822504 Car01g00481 01 3816882 3822504 ECH