Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00479 ATGGCACAGAATACTACTGAGGTTGACGATCATGGAAGTGATAACAAAGCCAACCAAAAGGTTCCATTTTACATGCTTTTCACATTTGCTGATAGCCTTGATGTAATGTTGATGATCGTTGGAACTATTTCTGCTCTTGCTAATGGAATGACACAGCCTATAATGACTCTCATTCTTGGAAAGATTATCAACACCTTTGGCTCAGCAGATCAACACCACATTGTTAAGGAAGTTGCTAAGGGTTCATTATTATTTATTTACTTGGCTATTGGATCTGGAATAGTATCATTCTTACAGGTAGCATGTTCGATGGTGACAGGAGAAAGACAAGCCGCAAGGATTCGTAGCTTGTATTTGAAAACAATATTAAAGCAAGATATTGCATTCTTTGACACTGAAACAACTACAGGAGAAGTAATAGGGAGAATGTCTGGTGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTGCAACATTTTTTGGTGGTTTTGTGATTGCCTTTGTAAAAGGATGGAGACTAGCTGTAGTTTTGCTTGCATGCATACCTTGTGTTGTCATTGTTGGCGGATTCATGTCTATGTTGACGGCTAAAATGTCGATTCGAGGACAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCATCTTTTACTGGGGAGAAAAAAGCAATAGAAAAGTACAATAGCAAGTTAAAAGTTGCTTATAAGACATTGGTTCAACAAGGGATTGCCTCAGGGTTAGGAATGGGGGCACTATCATTGATAGTCTTTAGTACCTATGGACTTGCAATGTGGTATGGTTCCAAATTGGTCCTTGAGAGAGGATATAACGGTGGAACTGTCATGACTGTAATCATAGCTCTTATGACTGGTGGAATGTCATTGGGTCAGACATCCCCATGTTTAGATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCTAAAATTGATGCATATGACACAAGTGGTGTTGTCTTGGAAGACATAAAGGGAGATATTGAACTCAAAGATGTTTACTTTAGATACCCTGCAAGGCTAGATGTGCAGATCTTTGCTGGATTCTCACTGTTTTTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCCACTGTAATCAGTTTATTGGAAAGATTTTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAGCTTGCAACTTAAATGGATAAGAGAACAGATTGGTTTGGTTAGTCAAGAGCCTATCTTGTTTACTACTACAATCAGAGAGAACATAGCATATGGAAAAGAAGGTGCAACTGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGTTGCCTCAGGGTCTTGACACAAAGGCAGGGCAAAATGGAACTCAACTTTCTGGTGGACAAAAGCAAAGAATTGCAATTGCAAGAGCAATATTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAATCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAGTGATGTTTAAAAGGACTACTGTGGTTGTTGCGCATCGGTTAACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGCAAAATCGTGGAGAAAGGAGCTCATGATGAGTTAATCAAGGATGAAGACGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTAAAGTCAACCAAAACTCAGAAGCAGATAAGTCAAGTCACATTTTAAATAGTCACATGGCTAGATCTTCCGACCAGAGAATTTCCTTTGTGAAATCCATAAGCCAAAGATCATCAGGGATACATTCCCTGTCACGTAGATTTTCCTTTCCTCATCTGAGTGGTGTACAAACAGAAGAACCAAATATTGAAGAAGGTGAACTTGATAATAAGAAGAAACACAAAAATGTTTCTATAAGACGTTTGGTCAAGTTGAACAAACCTGAGGTTCCTGTCTTAATACTTGGATCCATTGCTGCAATAGTGAACGGTGTAGTGTTCCCTATATTTGGCCTAGTGTTTTCATCAGCCATTACTATGTTTTATAAACCTCCAGAACAACAAAGGAAAGAGGCTAGGCTCTGGTCACTTCTATATGTGGGTTTAGGTTTGCTTACTCTGGTGGTTTTACCAATTCAGAATTATTTCTTTGGGGTTGCTGGTGGAAAACTTGTAGAAAGAATTCGTTCATTGACATTTGCAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATGACCCTGCAAATTCTAGTGGTGCAGTTGGTGCAAGATTATCTACAGACGCTTCGATGGTTAAAAGTCTTGTTGGTGACACATTGGCCCTCATTGTTCAAAACATATCAACAATCACAGCGGGTTTAGTTCTAGCATTCACTGCTAACTGGATTCTAGCTTTTATAGTTTTGGCTGTGACGCCGGTGGTCCTTATTCAAGGAATTCTTCAGATGAAGTTTCTTGAAGGATTCAGTGGAGATGCCAAGGTAATGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTAGTAGCATCAGAACAGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGATATGTATAGGAAGAAATGTACAGCGCCAGAAAAACAAGGTGTTCGTTTGGGGCTTGTTAGCGGTATAGGATTTGGTTTCTCTTTTGTGGCTATACATTGCATGAGTGCTTTCTGTTTCTACATAGGATCTGTTCTAGTGCAACACGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTTTTCTTTAGTTTAACAATAACAGCAGTAGGCATTTCCCAGTCTAGTACCTTGGCACCAGACACTAACAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGTAACCCTACTATTGACTCTAGTAGCAACGAAGGCGTAACATTAGAAACAGTTACAGGCGATATTGAACTTCAACATGTCAGCTTCAATTACCCAACAAGGCCTCATATTCAAATTTTCACCGATTTATGCCTAACCATATCTGCTGGAAAGACTGTTGCCTTGGTCGGAGAAAGTGGAAGCGGAAAATCAACAGTTATAAGCCTCTTAGAGAGATTTTATAACCCAGATTCCGGACATGTATTACTAGATGGAGTGGATATCAAAACATTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTAGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCTTCAGAGGATGAAATCATTGCAGCAGCCCAAGCAGCCAACGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACATCTGTTGGAGAAAGAGGCACACAACTATCCGGAGGACAAAAGCAGCGTATAGCTATTGCAAGAGCCTTGCTGAAAAATCCAAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCCGAGTCGGAGCGTATAGTTCAAGAGGCACTAGACAGAGTGAGTGTGAACAGAACAACTGTGGTGGTGGCTCACCGTCTTACAACAATTCGAGGGGCTGATACTATAGCAGTAATTAAAAATGGTGTGGTTGCTGAAAAGGGAAGACATGATGTGTTGATGAAGATTACTGACGGGGTTTACGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAA 3786 0.4015 MAQNTTEVDDHGSDNKANQKVPFYMLFTFADSLDVMLMIVGTISALANGMTQPIMTLILGKIINTFGSADQHHIVKEVAKGSLLFIYLAIGSGIVSFLQVACSMVTGERQAARIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLAATFFGGFVIAFVKGWRLAVVLLACIPCVVIVGGFMSMLTAKMSIRGQAAYTEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKVAYKTLVQQGIASGLGMGALSLIVFSTYGLAMWYGSKLVLERGYNGGTVMTVIIALMTGGMSLGQTSPCLDAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIKGDIELKDVYFRYPARLDVQIFAGFSLFFPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQLKWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKKFIDKLPQGLDTKAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMFKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDEDGAYSQLIRLQEGEKEAKVNQNSEADKSSHILNSHMARSSDQRISFVKSISQRSSGIHSLSRRFSFPHLSGVQTEEPNIEEGELDNKKKHKNVSIRRLVKLNKPEVPVLILGSIAAIVNGVVFPIFGLVFSSAITMFYKPPEQQRKEARLWSLLYVGLGLLTLVVLPIQNYFFGVAGGKLVERIRSLTFAKVVHQEISWFDDPANSSGAVGARLSTDASMVKSLVGDTLALIVQNISTITAGLVLAFTANWILAFIVLAVTPVVLIQGILQMKFLEGFSGDAKVMYEEASQVANDAVSSIRTVASFCAESKVMDMYRKKCTAPEKQGVRLGLVSGIGFGFSFVAIHCMSAFCFYIGSVLVQHGKATFPEVFKVFFSLTITAVGISQSSTLAPDTNKAKDSTASIFEILDSNPTIDSSSNEGVTLETVTGDIELQHVSFNYPTRPHIQIFTDLCLTISAGKTVALVGESGSGKSTVISLLERFYNPDSGHVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGASEDEIIAAAQAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARALLKNPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMKITDGVYASLVALHSSAS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00479 1261 Pfam ABC transporter transmembrane region 696 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00479 1261 Pfam ABC transporter transmembrane region 38 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00479 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 320 - -
Car01g00479 1261 SUPERFAMILY ABC transporter transmembrane region 683 999 IPR036640 GO:0005524|GO:0016021
Car01g00479 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1255 IPR003439 GO:0005524
Car01g00479 1261 Gene3D - 358 611 IPR027417 -
Car01g00479 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 1001 - -
Car01g00479 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Car01g00479 1261 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 1258 - -
Car01g00479 1261 Gene3D - 1008 1260 IPR027417 -
Car01g00479 1261 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524
Car01g00479 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 983 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00479 1261 SUPERFAMILY ABC transporter transmembrane region 34 344 IPR036640 GO:0005524|GO:0016021
Car01g00479 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Car01g00479 1261 CDD ABC_MTABC3_MDL1_MDL2 1018 1254 - -
Car01g00479 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1255 IPR027417 -
Car01g00479 1261 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Car01g00479 1261 Pfam ABC transporter 1038 1186 IPR003439 GO:0005524
Car01g00479 1261 Pfam ABC transporter 381 527 IPR003439 GO:0005524
Car01g00479 1261 SMART AAA_5 387 573 IPR003593 -
Car01g00479 1261 SMART AAA_5 1045 1232 IPR003593 -
Car01g00479 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00479 1261 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1258 IPR039421 -
Car01g00479 1261 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Car01g00479 1261 Gene3D ABC transporter type 1, transmembrane domain 83 987 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00479 Car-Chr1 3792890 3799032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00479 21 1257 Calmodulin-binding Proteins AT2G36910 45.360 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00479 K05658 - gmx:100801771 1970.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00479 01 3792890 3799032 Car01g00479 01 3792890 3799032 ECH