Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00478 ATGTCACAAAATACTACTGAGGTTGATGATCATGGAAGTGATATCAAAACCAACCAAAAGGTTCCATTTTACAAGCTTTTCACATTTGCTGATAGCCTTGATGTTATGTTGATGATCATTGGAACTATTTCTGCTCTTGCTAATGGAATGACACAGCCTATAATGACTCTCATTCTTGGAAAGATTATCAACACCTTTGGCTCATCAGATCCACACCACATTGTTAAGGAAGTTGCTAAGGTTTCATTATTGTTTGTTTACCTGGCTATTGGGACTGGAATAGCTTCATTCCTACAGGTAGCATGTTCGATGGTGACAGGAGAAAGACAAGCTGCAAGGATTCGTAGCTTGTACTTGAAAACAATATTAAAGCAAGATATTGCATTCTTTGACACTGAAACAACTACAGGAGAAGTAATAGGGAGAATGTCTGGTGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTCATTCAACTTGCTGCAACATTTTTTGGTGGTTTTGTGATTGCCTTTGTAAAAGGATGGAGACTAGCTGTGGTTTTGCTTGCATGTATACCTTGTGTTGTCATTGTTGGTGGATTCATGTCTATGTTGATGGCTAAAATGTCGATTCAGGGACAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCCTCTTTTACTGGGGAGAAAAAAGCAATAGAAAAGTACAATAGCAAGTTAAAAATTGCTTATAAGACATTGGTTCAACAAGGGATTGTCTCAGGGTTAGGAATGGGGGTACTATCATTGATAGTCTTTAGTACCTATGGACTTGCAATGTGGTATGGTTCCAAATTGGTCCTTGAGAGAGGATATAACGGTGGAACTGTCATGACTGTAATCATAGCTCTTATGACTGGTGGAATGTCATTGGGTCAGACATCCCCATGTTTAGATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCTAAAATTGATGCATATGACACAAGTGGTGTTGTCTTGGAAGACATGAAGGGAGATATTGAACTCAAAGATGTTTACTTTAGATACCCTGCAAGGCTAGATGTGCAGATCTTTGCTGGATTCTCACTGTTTGTTCCAAGTGGCACAACTACTGCCTTGGTGGGTCAAAGTGGAAGTGGGAAGTCCACTGTAATCAGTTTATTGGAAAGATTTTATGATCCTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAGCTTGCAACTTAAATGGATAAGAGAACAGATTGGGTTGGTTAGTCAAGAGCCTATCTTGTTTACTACTACAATCAGAGAGAACATAGCATATGGAAAAGAAGGTGCAACTGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGTTGCCTCAGGGTCTTGACACAAAGGCAGGGCAAAATGGAACTCAACTTTCTGGTGGACAAAAGCAAAGAATTGCAATTGCAAGAGCAATATTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAATCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAGTGATGTTTAAAAGGACTACCGTGGTTGTTGCGCATCGTTTAACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGCAAAATCGTGGAGAAAGGAGCTCATGATGAGTTAATCAAGGATGAAGGCGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTAAAGTCAACCAAAACTCCGAAGCAGATAAGTCAAGTCACATTTTAAATAGTAACATGGCTAGATCTTCCAACCAGAGAATTTCCTTTGTGAAATCCATAAGCCAAAGATCATCAGGGATACATTCCCTGTCACGTAGATTTTCCTTTCCTCATCTGAGTGGTGTACAAACAGAAGAACCAAATATTGAAGAAGGTGAGCTTGATAATAAGAAGAAACTCAAAAATGTTTCTATAAGACGTTTGGTCAAGTTGAACAAACCTGAGGTTCCTGTCTTAATACTTGGATCCATTGCTGCAATAGTGAACGGAGTAGTGTTCCCTATATTTGGCCTAGTGTTTTCATCAGCCATTACTATGTTTTATAAACCTCCAGAACAACAAAGGAAAGAGGCTAGGCTCTGGTCACTTCTATATGTGGGTTTAGGTTTGCTTACTCTGGTGGTCTTACCACTTCAGAATTACTTCTTTGGGGTTGCTGGTGGAAAACTTGTAGAAAGAATTCGTTCATTGACATTTGCAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGATTATCTACAGACGCTTCGATGGTTAAAAGTCTTGTTGGTGACACATTGGCCCTCATTGTTCAAAACATATCAACAATCACAGCTGGTTTAGTTCTAGCATTCACTGCTAACTGGATTCTAGCTTTTATAGTTTTGGCTGTGTCACCGGTGGTCCTTATTCAAGGAATTCTTCAGATGAAGTTTCTTGAAGGATTCAGTGGAGATGCCAAGGTGATGTATGAAGAGGCAAGTCAGGTGGCAAATGACGCTGTTAGTAGCATCAGAACAGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGCTATATATAGGAAGAAATGTACAGCGCCAGAAAAACAAGGTGTTCGTTTGGGGCTTTCTAGTACCTTGGCACCAGACACTAACAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGTAACCCTACTATTGACTCTAGTTGCAATGAAGGCGTAACATTAGAAACAGTTACAGGCGATATTGAACTTCAACATGTCAGCTTCAATTACCCAACAAGGCCTCATATTCAAATTTTCAAAGATTTATGCCTAACCATATCTGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTTATAAGCCTCTTAGAGAGATTTTATAACCCAGATTCTGGATGTGTATTACTAGATGGAGTGGATATCAAAACTTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTAGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCTTCAGAGGATGAAATCATTGCAGCAGCCCAAGCAGCCAATGCACACAGCTTTATAAGTTCTCTTCCAAATGGTTATGAAACATCTGTTGGAGAAAGAGGCACACAACTATCCGGAGGACAAAAGCAGCGTATAGCTATTGCAAGAGCCATGCTGAAAAATCCAAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCCGAGTCGGAGCGTATAGTTCAAGAGGCACTAGACAGAGTGAGTGTGAACAGAACAACTGTCGTGGTGGCTCACCGTCTTACAACAATTCGAGGGGCTGATACTATAGCAGTAATTAAAAATGGTGTGGTTGCTGAAAAGGGAAGACATGATGTGTTGATGGAGATTACTGACGGGGTTTACGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAG 3624 0.4018 MSQNTTEVDDHGSDIKTNQKVPFYKLFTFADSLDVMLMIIGTISALANGMTQPIMTLILGKIINTFGSSDPHHIVKEVAKVSLLFVYLAIGTGIASFLQVACSMVTGERQAARIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLAATFFGGFVIAFVKGWRLAVVLLACIPCVVIVGGFMSMLMAKMSIQGQAAYTEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKLKIAYKTLVQQGIVSGLGMGVLSLIVFSTYGLAMWYGSKLVLERGYNGGTVMTVIIALMTGGMSLGQTSPCLDAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDMKGDIELKDVYFRYPARLDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQLKWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKKFIDKLPQGLDTKAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMFKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDEGGAYSQLIRLQEGEKEAKVNQNSEADKSSHILNSNMARSSNQRISFVKSISQRSSGIHSLSRRFSFPHLSGVQTEEPNIEEGELDNKKKLKNVSIRRLVKLNKPEVPVLILGSIAAIVNGVVFPIFGLVFSSAITMFYKPPEQQRKEARLWSLLYVGLGLLTLVVLPLQNYFFGVAGGKLVERIRSLTFAKVVHQEISWFDDPANSSGAVGARLSTDASMVKSLVGDTLALIVQNISTITAGLVLAFTANWILAFIVLAVSPVVLIQGILQMKFLEGFSGDAKVMYEEASQVANDAVSSIRTVASFCAESKVMAIYRKKCTAPEKQGVRLGLSSTLAPDTNKAKDSTASIFEILDSNPTIDSSCNEGVTLETVTGDIELQHVSFNYPTRPHIQIFKDLCLTISAGKTVALVGESGSGKSTVISLLERFYNPDSGCVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGASEDEIIAAAQAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMEITDGVYASLVALHSSAS 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00478 1207 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 320 - -
Car01g00478 1207 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00478 1207 CDD ABC_MTABC3_MDL1_MDL2 964 1200 - -
Car01g00478 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 954 1201 IPR027417 -
Car01g00478 1207 CDD ABC_6TM_Pgp_ABCB1_D2_like 687 947 - -
Car01g00478 1207 SUPERFAMILY ABC transporter transmembrane region 26 344 IPR036640 GO:0005524|GO:0016021
Car01g00478 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Car01g00478 1207 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 964 1201 IPR003439 GO:0005524
Car01g00478 1207 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Car01g00478 1207 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 923 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00478 1207 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Car01g00478 1207 Pfam ABC transporter transmembrane region 38 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00478 1207 Pfam ABC transporter transmembrane region 696 921 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g00478 1207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 922 IPR039421 -
Car01g00478 1207 Pfam ABC transporter 381 527 IPR003439 GO:0005524
Car01g00478 1207 Gene3D ABC transporter type 1, transmembrane domain 84 917 IPR036640 GO:0005524|GO:0016021
Car01g00478 1207 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 15 922 - -
Car01g00478 1207 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Car01g00478 1207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 920 1204 IPR039421 -
Car01g00478 1207 SUPERFAMILY ABC transporter transmembrane region 683 923 IPR036640 GO:0005524|GO:0016021
Car01g00478 1207 Gene3D - 358 611 IPR027417 -
Car01g00478 1207 SMART AAA_5 387 573 IPR003593 -
Car01g00478 1207 SMART AAA_5 991 1178 IPR003593 -
Car01g00478 1207 Gene3D - 954 1206 IPR027417 -
Car01g00478 1207 ProSitePatterns ABC transporters family signature. 1104 1118 IPR017871 GO:0005524
Car01g00478 1207 Pfam ABC transporter 983 1132 IPR003439 GO:0005524
Car01g00478 1207 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 920 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00478 Car-Chr1 3771688 3776708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00478 670 1206 Calmodulin-binding Proteins AT2G36910 39.262 1.44e-112 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00478 01 3771688 3776708 Car01g00478 01 3771688 3776708 ECH