Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00467 ATGGATTTTCAAAATCAATCTATGTCAGATTCTCCACAGAGAAAGataggaaggggaaagattgagatcaaaaggattgagaacacaaccaatcgccaagtaactttctgcaaacgtagaaatggattgctcaaaaaagcatatgaattatctgttctttgtgatgcagaagttgctctaatagtcttctctagccgtggacgcctctatgaatATGCTAATAACAGTGTCAAAGCAACTATTGAAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAATTGCGTGCGCAAATTAGTAATCTGCAGAATAACAACAGATTAAAGTGCAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGACTGCCAAGGAACTCAAAAACTTGGAGGGTAAATTAGAAAAGGGAATAAGTAGGATTCGTTCCAAAAAGGAAATAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAAAGGAACCACCATAATATGAGTGTGTTACCTGGAGGCACAAGCTATGAATCTATGCAATCTcagcatcagcagcagcagcaacaATATGATTCTCGTGGTTACTTTCAAGTCACTGGATTACAACCTAGTAGTCAGTATGCACGACAAGACCAAATGTCACTTCAATTAGTTTGA 714 0.2829 MDFQNQSMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGTGSASEANAQFYQQEADKLRAQISNLQNNNRLKCRQMMGESLGSMTAKELKNLEGKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERNHHNMSVLPGGTSYESMQSQHQQQQQQYDSRGYFQVTGLQPSSQYARQDQMSLQLV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00467 237 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Car01g00467 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 MobiDBLite consensus disorder prediction 186 210 - -
Car01g00467 237 MobiDBLite consensus disorder prediction 1 20 - -
Car01g00467 237 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Car01g00467 237 Pfam K-box region 99 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00467 237 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 Coils Coil 102 129 - -
Car01g00467 237 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Car01g00467 237 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 17 226 - -
Car01g00467 237 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 MobiDBLite consensus disorder prediction 177 210 - -
Car01g00467 237 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Car01g00467 237 ProSiteProfiles K-box domain profile. 102 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00467 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00467 Car-Chr1 3643779 3652045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00467 14 237 MADS-box Gene Family AT3G58780 62.241 6.21e-97 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car01g00467 K-box 8.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00467 K09264 - gmx:732595 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00467 01 3643779 3652045 Car01g00467 01 3643779 3652045 ECH
Car06g00946 06 9259072 9267287 Car01g00467 01 3643779 3652045 PCT