Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00456 ATGGGTGATATTTCAGCTACCAATGATGTGGTTTTAAATGTTGATGCCAATGACTCAATCATTGAAGATAGTGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATTCATGTTGATATTTGTTGGTTGTGGTGTAGTGGTGACGAACCTTAACAATGATAATGTAGTGACACTTCCTGGTGTTGCAATTGTTTGGGGACTTGCTGTTATGGTATTGGCCTATTCTCTCGGTCACGTCTCTGGTGCTCATTTCAATCCTGCTGTCACCATTGCTCAGGCTTCCACCAAAAGATTTCCTGTCCAACAGATACCAACTTATATAATTGCTCAGCTCTTTGGATCAATACTTGCAAGTGTTGTTCTTAAAGTTATATTCAGTGACAAGGAAAATCGTTTTGTAGGAACACTTCCAGCTGGTTCTAACCTCCAAGCTTTTGTGGTCGAATTTCTAATCACTTTCTTACTTATGTTCGTTATTTCTGGAGTTGGCACTGATAACAGAGCGGTTAATGAATTGGCTGCACTTGCAGTTGGATCTACAGTGCTACTAGTTGTGTTGTTTGCTGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCAGCTATTGTGCACCATGAATATAGAGGAATATGGATATATTTGGTGTCACCTATTCTAGGAGCTTTGGCCGGTACATTGACATATACTTTCATTAGATACACAAAGTGA 729 0.4088 MGDISATNDVVLNVDANDSIIEDSVPLLQKLVAEVVGTFMLIFVGCGVVVTNLNNDNVVTLPGVAIVWGLAVMVLAYSLGHVSGAHFNPAVTIAQASTKRFPVQQIPTYIIAQLFGSILASVVLKVIFSDKENRFVGTLPAGSNLQAFVVEFLITFLLMFVISGVGTDNRAVNELAALAVGSTVLLVVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPILGALAGTLTYTFIRYTK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00456 242 ProSitePatterns MIP family signature. 86 94 IPR022357 -
Car01g00456 242 Gene3D Glycerol uptake facilitator protein. 12 242 IPR023271 -
Car01g00456 242 Pfam Major intrinsic protein 24 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PANTHER AQUAPORIN NIP2-1 6 241 IPR034294 -
Car01g00456 242 TIGRFAM MIP: MIP family channel proteins 33 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 150 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 6 241 - -
Car01g00456 242 CDD MIP 29 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00456 242 SUPERFAMILY Aquaporin-like 25 240 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00456 Car-Chr1 3580309 3581615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00456 25 241 Major Intrinsic Protein MIP AT5G37820 57.604 1.90e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00456 K09874 - gmx:100812577 341.658