Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00455 ATGGCTGATCATTCAGAAAGCAATGGAAACCGTGAGATGGTTTTGAATGTAAATGGTGATGCCTCTAATATTTGTGACAACTCAAGCATCGAGGAACGTGTGCCCCTTTTGAAGAAGTTGGTAGCAGAGGTGGTGGGTACATACTTGTTGATATTTGCAGGTTGTGGTGCAGTAGTGGTGAACCTTGACAAAGACAAAGTAATAACACATCCGGGAATTTCAATTGTTTGGGGACTCACTGTTATGGTATTGGTTTACTCTATTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTCATGCTTCTACCAAAAGATTTCCTCTTAAGCAGGTTCCAGCTTATGTAATAGCTCAAGTACTTGGATCTACACTTGCAAGTGGAACACTTAGACTTATATTCAATGGCAAAGAAAACCATTTTTCAGGAACACTACCCGCTGGGTCTAATCTTCAATGTTTTGTTGTCGAATTTATAATAACTTTTTATCTCATGTTCGTCATTTCTGGAGTTGCCACCGATAATAGAGCGATTGGCGAGTTGGCTGGACTTGCAGTTGGGTCTACAGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACTGGAGCATCAATGAATCCTGCAAGGAGTTTAGGACCTGCCATTGTTCATAATGAATACAGAGGAATATGGATATACATAGTGTCAACTACTCTTGGAGCTATGGCCGGTACATGGGTCTATAATATCATTAGATATACAAACAAACCGGTGCGTGAAATTAGCAAGAGTGCCTCTTTCCTTAGAGGAGTACAAAATGGCATAGCTAAGTGA 822 0.4112 MADHSESNGNREMVLNVNGDASNICDNSSIEERVPLLKKLVAEVVGTYLLIFAGCGAVVVNLDKDKVITHPGISIVWGLTVMVLVYSIGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQVLGSTLASGTLRLIFNGKENHFSGTLPAGSNLQCFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYIVSTTLGAMAGTWVYNIIRYTNKPVREISKSASFLRGVQNGIAK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00455 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Car01g00455 273 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 SUPERFAMILY Aquaporin-like 34 257 IPR023271 -
Car01g00455 273 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Car01g00455 273 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Car01g00455 273 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Car01g00455 273 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00455 273 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00455 Car-Chr1 3575111 3577343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00455 1 269 Major Intrinsic Protein MIP AT5G37820 55.957 2.65e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00455 K09874 - gmx:100786924 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00953 06 9326973 9329131 Car01g00455 01 3575111 3577343 PCT