Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00454 ATGGGTGATATTTTAGATAGCAATGATGTGGTTTTGAAGGTAGATGATTCAATCATTGAAGATAGTGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATTCATGTTGATATTTGTTGGTTGTGGTGTAGTGGTGACGAACCTTAACAATGATAATGTAGTGACACTTCCTGGTGTTGCAATTGTTTGGGGACTTGCTGTTATGGTATTGGCCTATTCTCTCGGTCACGTCTCTGGTGCTCATTTCAATCCTGCTGTCACCATTGCTCAGGCTTCCACCAAAAGATTTCCTGTCCAACAGATACCAACTTATATAATTGCTCAGCTCTTTGGATCAATACTTGCAAGTGTTGTTCTTAAAGTTATATTCAGTGACAAGGAAAATCGTTTTGTAGGAACACTTCCAGCTGGTTCTAACCTCCAAGCTTTTGTGGTCGAATTTCTAATCACTTTCTTACTTATGTTCGTTATTTCTGGAGTTGGCACTGATAACAGAGCGGTTAATGAATTGGCTGCACTTGCAGTTGGATCTACAGTGCTACTAGTTGTGTTGTTTGCTGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCAGCTATTGTGCACCATGAATATAGAGGAATATGGATATATTTGGTGTCACCTATTCTAGGAGCTTTGGCCGGTACATGGACATATACTTTCATTAGATACACAAACAAACCAGCAACAATCCCCAAGAGTGCTTCATTCCTCAAAGGAGCTTAA 768 0.4102 MGDILDSNDVVLKVDDSIIEDSVPLLQKLVAEVVGTFMLIFVGCGVVVTNLNNDNVVTLPGVAIVWGLAVMVLAYSLGHVSGAHFNPAVTIAQASTKRFPVQQIPTYIIAQLFGSILASVVLKVIFSDKENRFVGTLPAGSNLQAFVVEFLITFLLMFVISGVGTDNRAVNELAALAVGSTVLLVVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPILGALAGTWTYTFIRYTNKPATIPKSASFLKGA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00454 255 PRINTS Major intrinsic protein family signature 27 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 6 254 - -
Car01g00454 255 Pfam Major intrinsic protein 22 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 Gene3D Glycerol uptake facilitator protein. 13 249 IPR023271 -
Car01g00454 255 CDD MIP 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 PANTHER AQUAPORIN NIP2-1 6 254 IPR034294 -
Car01g00454 255 SUPERFAMILY Aquaporin-like 23 244 IPR023271 -
Car01g00454 255 TIGRFAM MIP: MIP family channel proteins 31 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00454 255 ProSitePatterns MIP family signature. 84 92 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00454 Car-Chr1 3567887 3569477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00454 23 253 Major Intrinsic Protein MIP AT5G37820 57.328 3.13e-91 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00454 K09874 - gmx:100812577 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00454 01 3567887 3569477 Car01g00454 01 3567887 3569477 ECH