Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00448 aTGGAGGAAGGTCATAGCAGTTCCAATTCTATgcctcctttcttgtccaagacttatgagatggttgatgatccttcaactgataccattgtttcatggagtgtcaccaataggagtttcattgtttggaatcaaccagattttgcaaaggatttgttgcccaaatactttaagcataataacttctcaagcttcatcagacagctcaacacctatGGCTTTAGAAAAGTTGATCCAGAGCAATGGGAATTTGCAAATGATGATTTTGTAAAAGGTCAACCACATCTTATGAAGAATATCCATAGGCGCAAACCGGTTCATAGCCATTCTTTGCAGAATGTCCATGGCCAAGGGGCTGCTGCTCCTCCATTAACAGAATCTGAACGGCGGAATTTGAAAGGCGAGATTCAAATACTTAAACATGATAAACAGCAACTTCTTCTGGAATTTCAGAGACAAGAACAGGAGCAGAACATCAATGAGATAGATTTACTTTGCCTGAAGGATAGGTTGGAAAACTTGGAACAGAAGCAACAAAACATGCTGTCTTCTGTTTCTCAAGTGCTGCAGAAACCTGGTGTTGAATTAAGTCTCTATCCACTTACAGAGAACACGGAGAGAAAACGAAGGTATCCGAGAAATAGTTCCTTTAGTGATGAAGCTAGCATTGAAGATCCTATTGAAATTTCTCAAATGTTATGTGGAGAAAACGCTGATAGTACATCTGTTCTCTCATTAAGCATGGAACGATTGGATCTGCTCGATTCGTCCATAATGTATTGGGAGAATATTATGCTCGATTTGGGTGAAGCTTCTTTTCAAAGTCATTCAAACATAGATTTTGATGATTCTATTAATTGTGCAGATAGTCCGGATATATCTTGTGTACAACTAGATTTTGAAGTTCTGCCCAAGTCACCAATGATCGACGTGAACCCTGAGCCTGCTGTAGCCGTTGTTCCCTATCCTGTTGCATCAGAAGAACAACCTGCAGCAACAGCCCCTGTGACTACTGGTGTTAATGACGTATTTTGGGAACAATTCTTGACAGAAAATCCTGGTTCGAACGAAACTAGTGGAAAGAATAATGAAGGTAAGCCTGGTGAACAGGACCAATTTTGGTGGGACTATAGGAATATAATTAGATAA 1149 0.3368 MEEGHSSSNSMPPFLSKTYEMVDDPSTDTIVSWSVTNRSFIVWNQPDFAKDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVKGQPHLMKNIHRRKPVHSHSLQNVHGQGAAAPPLTESERRNLKGEIQILKHDKQQLLLEFQRQEQEQNINEIDLLCLKDRLENLEQKQQNMLSSVSQVLQKPGVELSLYPLTENTERKRRYPRNSSFSDEASIEDPIEISQMLCGENADSTSVLSLSMERLDLLDSSIMYWENIMLDLGEASFQSHSNIDFDDSINCADSPDISCVQLDFEVLPKSPMIDVNPEPAVAVVPYPVASEEQPAATAPVTTGVNDVFWEQFLTENPGSNETSGKNNEGKPGEQDQFWWDYRNIIR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00448 382 Coils Coil 129 156 - -
Car01g00448 382 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Car01g00448 382 MobiDBLite consensus disorder prediction 351 366 - -
Car01g00448 382 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car01g00448 382 Coils Coil 164 191 - -
Car01g00448 382 MobiDBLite consensus disorder prediction 351 370 - -
Car01g00448 382 Gene3D - 5 104 IPR036388 -
Car01g00448 382 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 373 - -
Car01g00448 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 373 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00448 Car-Chr1 3523132 3525740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00448 7 380 HSF AT4G18880 50.128 3.23e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car01g00448 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00448 K09419 - gmx:100798004 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00448 01 3523132 3525740 Car01g00448 01 3523132 3525740 ECH
Car01g00448 01 3523132 3525740 Car06g00957 06 9353978 9356213 ECH
Car06g00957 06 9353978 9356213 Car01g00448 01 3523132 3525740 PCT