Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00446 ATGGCTTCAGGGGCAATTTTCTCTTCGCTGCGGCGGCGAAGATCGCCGACGTTGGAAGCTTTTCTTGCTCCCGTTGATTTAAGCGATGTCGCTTTGGTTCAGACCCTTATGGCGGTGGCGAACGAGCTTGTGTGTTGTTTTTCAAAGCGTTCCTTTTTCTTTCAGAGGAAAAATTCACGGTCTTTGATCAGAAAAGTTGAAGTTTTTCAGTTTCTTTTGGAGTATTTGAATGATTCAGGTTCTTCCCTTCCACCTACAGCTTTGCTTTGTCTTAAGGAGCTTTATTTGTTGTTGTATCGTTCCAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACCCTTTTAGATGTTTTTCCTGTTAAGGATGTTGGTTTGAGTAAGGATGTTAGGGAACAGGTTGAACTTTTGTTGAATCAGTCAAGGAGGGCTAAGCTTTTTATAGATATGGAAGATGATGCTCTTAGGATTCGTTTCTTTTTGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCGGCCGAATTGCGATCTTTCTATGTTGATAAATTGCAGATTGTTGATGCTGCTAGTTGTAGGATTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGATATTGAGCCAACAATTTCTGTGCTTAAAGGGTTGGTGGCTATGACTCGGTATTGTAGGTTTTTGCTTTTCGGTTTTGAGGAAGATGAACTTGATTTGGAAAATGGAAGTCAGAAGAAACCAAAGAAGGGTTTGATTACTCAAGAAATTGCTGATACATTTTTAACTGTTCCAAAGGACTTTTGTTGCCCAATATCATTGGATTTGATGAGAGATCCCGTGATTATTTCCACCGGTCAAACTTATGATAGGAGTTCAATTTCAAGGTGGATGGATGAAGGGCATACAACTTGCCCGAAAACTGGTCAAATGCTTGCTCACACTCGTCTTGTCCCGAATCGCGCCTTGAGGAATTTGATTGTGCAGTGGTGTAGCGCTGACGGAATTCCCCTTGATCCACCAGAGGTGATGGATGCAATGAGCGAAGCTTTTGCATCAGCATGTCCGACCAAAGCGGCCCTTGAAGCCAACAGAGCCACAGCAACGCTTCTCATTCAACAGTTAGCTAATGGATCGCAATCTGGAAAGACTATAGCTGCTCGGGAGATTCGATTGCTTGCAAAAACCGGCAAAGAAAATCGCGCCTTCCTTGCAGAAGCGGGTGCAATTCCTTATCTTCGGAACTTACTTTCATCGCGTAATTCCGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAATCTATCCATTTACGATAAGAACAAAAGCCGGATCATGGATGAGAGAGGTTGTCTTGGATCAATTGTCGATGTGTTGAGATTCGGACATACAACAGAAGCAAGAGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCAGTCCATGACTATAAGAAGATAATTGCGGATGAAACGGGAGCTATTGAAGCCTTGGCAGGACTATTGCAAGATGGAACTCCTAGAGGGAAAAAAGATGCAGTAACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTCGGATGATTGAGGCAGGAGCCGTGACAGCTCTAGTTGCGGCTTTGGGGAACGAAGGAGTTGCCGAAGAAGCAGCTGGTGCCTTGGCCTTAATCGTTCGTCAGCCATTTGGAGCCAAAGCAGTAGTAAATCAGGAAGAAGCAGTAGCAGGATTGATAGGAATGATGCGCTGCGGAACACCGAGGGGGAAAGAGAACGCGGTTGCAGCATTGCTCGAGTTATGTCGGAGTGGTGGTTCAGCTGCAACCGAAAGGGTGGTAAAGGCACCGGCTTTGGGTGGATTACTTCAAACCCTACTTTTTACCGGGACAAAGCGAGCTAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCAAACTAGGGATACAAGCTTTGCTGGTGATGTTTCAGTACCAATGTCCATCTCTGTACCTGTATTATAG 2148 0.439 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLMAVANELVCCFSKRSFFFQRKNSRSLIRKVEVFQFLLEYLNDSGSSLPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLLNQSRRAKLFIDMEDDALRIRFFLFLDEFENGRIPDSAELRSFYVDKLQIVDAASCRIEIEALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLLFGFEEDELDLENGSQKKPKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQMLAHTRLVPNRALRNLIVQWCSADGIPLDPPEVMDAMSEAFASACPTKAALEANRATATLLIQQLANGSQSGKTIAAREIRLLAKTGKENRAFLAEAGAIPYLRNLLSSRNSVAQENSVTALLNLSIYDKNKSRIMDERGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAIEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVAALGNEGVAEEAAGALALIVRQPFGAKAVVNQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPALGGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDTSFAGDVSVPMSISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00446 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 696 - -
Car01g00446 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Car01g00446 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Car01g00446 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Car01g00446 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 360 IPR013083 -
Car01g00446 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Car01g00446 715 SUPERFAMILY RING/U-box 276 360 - -
Car01g00446 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Car01g00446 715 Gene3D - 391 515 IPR011989 -
Car01g00446 715 Coils Coil 212 232 - -
Car01g00446 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Car01g00446 715 PANTHER U BOX DOMAIN-CONTAINING 12 696 - -
Car01g00446 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Car01g00446 715 Gene3D - 30 144 IPR036537 GO:0007166
Car01g00446 715 Gene3D - 516 671 IPR011989 -
Car01g00446 715 SMART arm_5 506 546 IPR000225 GO:0005515
Car01g00446 715 SMART arm_5 462 504 IPR000225 GO:0005515
Car01g00446 715 SMART arm_5 421 461 IPR000225 GO:0005515
Car01g00446 715 SMART arm_5 547 585 IPR000225 GO:0005515
Car01g00446 715 SMART arm_5 586 627 IPR000225 GO:0005515
Car01g00446 715 Pfam U-box domain 288 356 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00446 Car-Chr1 3501614 3504282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00446 1 715 U-box Gene Family AT1G29340 69.524 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00446 - - mtr:MTR_2g018010 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00446 01 3501614 3504282 Car01g00446 01 3501614 3504282 ECH