Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00444 ATGACTAGGGCTATTCGCAATAGGGTACTCAAAGATGCCAATGGTGATATTAGTGACCATCTAAGAAACCACATTCATTTAACAAATTGTATTCATTTGAAGAACCATATGCATAAAAACAGTCCAATACTTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGCTTCAAAGATCGCATTCTCTTAGAGATCCTTCTGCAAGTCCTCCATCATGGCACTCTCCTTCTGTTGTTGACTTGCTTTTCAAAAGAGCTGAAAATGATACCATGAATCAGGTGGGAAGAAGGTCTTTAGGTGTTAACAGTAGGAGAATGTCTGGAACCTCACCACCTTTGGTGAGTAAAGGTACATCAAGAGTTGCTCCTGGCGAGGTTAGTAGGGGTAATGATGTGGTACAGGTGGCAACTAGTGAACGGAGTAGCAAGAGTGGAGTAGGGGATGGGAGGAAAGTTGGGAGAGAGGAATCTGGCAGGAAGAGTAATAGGCCTGATTATTTGGAAGTTAGTCAAGAGAAACCTCTTCACGAGGCTGGCAAAAGTTTGGCGGAAGATGTTGTTTCGAGGCATTCTGAATCGAAAGAGAGGAAGAATAGACAGAGGGGGAAGAATGTTCAAGATTTTCAAGTTAAGACTCTTTCGGAACAGCTGAATGATGTTCCTTTGGATAGTGATGATTTAGCATCGTCGAACATTCATTTCCGTGCAAGGTTACCAAGACAGGAGAAAGTTATTGAGGAGGCACAAGCCGGAATGCGCGGTCACGCAAATGGAATGAATAGGATAAAAAGGCGTAAGTTTCGAAGCACAAGAAGAACTCGGGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCTTTTGCACAAGGTTCTGCTAACAAGAAATATAACTCGGAGGAGGTTGACGAGTATGCAGATGATAATGTTACTCGGGCTCCAAAAAATGGGTGTGGCATGCCTTGGAATTGGTCAAGAATTCATCATAGAGGTAAAACGTTCCTTGACATTGCTGGGAGAAGTTTGTCGTGTGGTTTATCTGACTCGAAGTTAAAAAAAGGGACATTTACTGCCAATGGAAGAAATCTTTCTGAGATGCCGGTGGCAGCTGACAACTCTAGCTCATGTACTAACTCTGATGCCGAGGCACTGCCTTTGCTAGTCGATGCGTCTGGATCTCATGGAAGCACTGAAAATGCTTGTTGGGGCCGCGATTATTCCGGTGAACTAGGTATTTATGGTGATAATTTATTCAAGCAAGATATTGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTGGCCAACATAAGTTGAGACGGAATCATCATAGTAGACACCAAAGTTTAACGCAAAAATATATGCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTATCAAATGCAGTGATAAGACGGAAAGTTGGATTGCTGTATGTATTTTATGGTCCCCATGGCACCGGGAAAACTTCCACTGCTCGCATATTTGCAAGAGCTTTGAATTGTACTTCGTCGGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCGTAGCACATGATATGGGGAAGAGTAGGAATATAAGGGAAGTTGGTCCAGTCAGCAATTTTGACTTTGAGAACATCATGGATCTACTCGACAATATGATTGTTTCGCAGCTTCCATCACAGTACAGAGTATTTATTTTCGATGATTGTGATACTTTGTCGGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGCAGATATTGTGTATACACTGCAGTGGATTGCAACCAAAGAAGGGCTAGATATTGATAAGGATGCCTTGAAACTCATTGCGTCAAGGTCAGACGGATCATTGAGAGATGCCGAGATGACCCTTGAGCAACTTAGTTTGCTTGGTCAGAGAATTTCTGTTCCACTTGTTCAAGAGCTGGTAGGGCTTATATCCGATGAGAAGTTGGTGGATCTGCTCGATTTGGCATTATCCGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTAATAATGGAAGCTGGTGTTGAACCAATAGCTTTGATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACTAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAACCATTGTCCAAAGACGACATGGAAAAGCTTCGTCAAGCTCTGAAAACTTTATCTGAGGCAGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCAGACCAGCAATATGTATTGCCTACTTCATCTGATAATAGTTTCAATCATAGTCCCTTCGCTCTACAAAACGGAAATGTGAAAGAAGCTAATAGAAACACCGGTAATCCTGTTGAAATTCCTAATAGAACGAGGCGAATGTCAATGGATGCTAGAATGGAAAATTTCCATGCTGGAAGCTCAGCAGACGGTATGACAAAAGGTCTTAGTCCAGAGAAAAGAAGACTTAGCGTGTCTGGTTTTGCTCCGCAACATACTTATTCACATTCCACCGAAAAGACTAGGGTAAATGAAAGGAAGACTCTGGATAAAAACCGCAAAGAAATTGAAGAGATATGGTTAGAGGTGCTAGAGAGGATTCACTATCCTGGTCTCAAAGAGTTTTTGTATAAAGCTGGCAAGCTGATCTTCATTAGCTTTGGCGCAGCTCCAACTGTGCAGCTAATGTTTGACTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACCGGTCACATCTTACAAGCATTTGAATCTGTTCTTGGATCATCTGTAACCATAGAAAGTAGATGTGAGTCAAATAAAGATGCAGTTTCTCCTGTTCAACTGCCTCTCGTATTGCCTGCTATCAATGACGGTTCATCTCAGATTAGAGACTTAATTCATGTTGGCACTGAAGCCCGTTCACTAAACGAATCTGTTGAAAAGAGAAGGAGTGAAATTGTTGAAGAAGAAGAAGCATCTCATATGCAGGACAAGAATAATGGGCAGCAGTCGCAAAAATTACCGACTGTAAAGTCACATTTAGACAGAAGAAAGCTTAGTGAGCAAGGTCAAAGCCTAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCCGAAAAGCTTGAACAAGAGAATTTGAGACTGGAGCCAAGATCAAGGAGTTTGTTATGTTGGAAAGCTTCTAGAGCGACTCGTCGGAAGCTGTCGCGCTTGAAAATCCGAACACGAAAACCACGTGCATTGCTGAACCTTGTTACATGTGGGAAATGTCTCTCCACGAAATCTCCAAGGTAG 3504 0.4221 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSHSLRDPSASPPSWHSPSVVDLLFKRAENDTMNQVGRRSLGVNSRRMSGTSPPLVSKGTSRVAPGEVSRGNDVVQVATSERSSKSGVGDGRKVGREESGRKSNRPDYLEVSQEKPLHEAGKSLAEDVVSRHSESKERKNRQRGKNVQDFQVKTLSEQLNDVPLDSDDLASSNIHFRARLPRQEKVIEEAQAGMRGHANGMNRIKRRKFRSTRRTRVATTSRDIGAENELSVASNSFAQGSANKKYNSEEVDEYADDNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSLSCGLSDSKLKKGTFTANGRNLSEMPVAADNSSSCTNSDAEALPLLVDASGSHGSTENACWGRDYSGELGIYGDNLFKQDIDSDLASEARSGGQHKLRRNHHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVIRRKVGLLYVFYGPHGTGKTSTARIFARALNCTSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDADIVYTLQWIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPIALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALQNGNVKEANRNTGNPVEIPNRTRRMSMDARMENFHAGSSADGMTKGLSPEKRRLSVSGFAPQHTYSHSTEKTRVNERKTLDKNRKEIEEIWLEVLERIHYPGLKEFLYKAGKLIFISFGAAPTVQLMFDSQLSKSTAEKFTGHILQAFESVLGSSVTIESRCESNKDAVSPVQLPLVLPAINDGSSQIRDLIHVGTEARSLNESVEKRRSEIVEEEEASHMQDKNNGQQSQKLPTVKSHLDRRKLSEQGQSLSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRTRKPRALLNLVTCGKCLSTKSPR 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00444 1167 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 177 1134 - -
Car01g00444 1167 MobiDBLite consensus disorder prediction 92 204 - -
Car01g00444 1167 MobiDBLite consensus disorder prediction 1027 1046 - -
Car01g00444 1167 MobiDBLite consensus disorder prediction 143 203 - -
Car01g00444 1167 Pfam DNA polymerase III, delta subunit 470 627 - -
Car01g00444 1167 CDD AAA 468 627 - -
Car01g00444 1167 MobiDBLite consensus disorder prediction 1027 1066 - -
Car01g00444 1167 Coils Coil 763 790 - -
Car01g00444 1167 Coils Coil 1022 1042 - -
Car01g00444 1167 PANTHER PROTEIN STICHEL-LIKE 3 177 1134 - -
Car01g00444 1167 MobiDBLite consensus disorder prediction 435 455 - -
Car01g00444 1167 SUPERFAMILY post-AAA+ oligomerization domain-like 698 801 IPR008921 GO:0003677|GO:0006260
Car01g00444 1167 Gene3D - 628 690 - -
Car01g00444 1167 Pfam DNA polymerase III subunits gamma and tau domain III 683 799 IPR022754 GO:0003887
Car01g00444 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 674 IPR027417 -
Car01g00444 1167 SMART AAA_5 486 627 IPR003593 -
Car01g00444 1167 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 453 801 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Car01g00444 1167 Gene3D - 445 624 IPR027417 -
Car01g00444 1167 MobiDBLite consensus disorder prediction 92 115 - -
Car01g00444 1167 CDD HLD_clamp_pol_III_gamma_tau 627 690 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00444 Car-Chr1 3484910 3491832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00444 453 751 Core DNA Replication Machinery Family AT1G21690 24.013 5.65e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00444 - - gmx:100809005 1875.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00444 01 3484910 3491832 Car01g00444 01 3484910 3491832 ECH