Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00438 ATGGTAAGAGGAGTAACTGATAATGGAATCCGTAGCAGAAAGAAATCATCAAGAGGTCACCACAGATTCGTAGGAGTTCGTCAAAGACCATCAGGAAGATGGGTGGCAGAGATCAAAGACTCTATACAGAAAATTAGGCTCTGGCTCGGTACATTTGATACAGCTGAAGATGCAGCTCGTGCTTATGACACTGCTGCTAGAGCTTTAAGAGGTGCTAATGCAAGAACAAACTTTGATTTGCCACAAGCTGCAACCAATGGTGGTGGTGGTGCCAAACGTGGTGCTAGTTCCACTTTCAAGATGGAAACCACTGAACCCTTTTCTTTTGAGGATGTAAATGAATCTGGGTCAGATTCAAATTGTTTTCTTGGTGCACTAAAAGCAAAACTTTTTGATGGAAAAGAAGGGAGGTTTTTTTCATTTCCTTTTCATAATTCTGTTCCTGTTGTTCAATCAAACATGGTTTCAAATTCAAGTCAGAACTTTTGTGCTAAGAATGAATTAACTCATGCTAATAATAATACTATGCCTAGTTTGTTGAGTGTTTCATCAAACACTTCTTCTAAGAGTGTTGTCATACCAAATCATGATCATGAAGTTGTTGATGGTGTTAACAATAATCAACTTTGTCAAACACCATCTATTATGACAAACATGTTATGGTCAAATGAAATGGAATATGAATTTCCTTGGCATACTCAGAATATGATGACTCATGTTCCTGATAATAGTATTAGTACTAGTTTTCCATGGCCAGGGGTAATAGAGTCAAATGTTGAAACAAATATGGTGAACATGCAGTTACCTATAGTTGGTGGAGCAAATGAAGGGTTTTGGACATTGGAGCAGCAACAGCAGTTTGTTCAATGTGAGAACAATAGTTGGTTTGGTTCTAGTGGATCTTGGGATCCTCTTATCTATGTTCCCTCTGAGCTAGCTTGA 942 0.3832 MVRGVTDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSIQKIRLWLGTFDTAEDAARAYDTAARALRGANARTNFDLPQAATNGGGGAKRGASSTFKMETTEPFSFEDVNESGSDSNCFLGALKAKLFDGKEGRFFSFPFHNSVPVVQSNMVSNSSQNFCAKNELTHANNNTMPSLLSVSSNTSSKSVVIPNHDHEVVDGVNNNQLCQTPSIMTNMLWSNEMEYEFPWHTQNMMTHVPDNSISTSFPWPGVIESNVETNMVNMQLPIVGGANEGFWTLEQQQQFVQCENNSWFGSSGSWDPLIYVPSELA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00438 313 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Car01g00438 313 MobiDBLite consensus disorder prediction 1 25 - -
Car01g00438 313 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Car01g00438 313 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Car01g00438 313 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Car01g00438 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 308 - -
Car01g00438 313 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Car01g00438 313 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 308 - -
Car01g00438 313 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Car01g00438 313 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Car01g00438 313 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00438 Car-Chr1 3439198 3440139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00438 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 2.10e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car01g00438 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00438 - - mtr:MTR_2g016730 356.681