Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00430 ATGGCCAAACTATACtctcgtgactcttgtctctgtattctctctctttctctATTTTACTTCCTCACTTGCTTAGTAGCTATAGGTAGTACTAATAACATAACCGATGAATTTTCACTTCTTGCATTGAAATCCTCAATTACCTTAGACCCTTATCATATTCTTAGTAATTGGTCAATCTCTTCTTCTTCATGCAATTGGGTTGGTGTCACTTGTGATGAACATCATGGTAGAGTAAATGCATTGAATCTTAGTAACATGGGACTTGAAGGTACTATTTCTCCTCAACTAGGGAATCTTTCTTTCCTTGTTGTTCTTGATTTACATGCCAATAATTTTCATGGTGAGTTGCCACGAGAGTTACTTCAATTGCATAGACTCAAGTTTTTGAACTTGAGCTACAATGATTTTGTTGGAGAAATTCCTTCAAGGATAGGGGATTTATCAAAACTTCAACATTTGGATATTGGTCATAATAATATTGTTGGATTTATTCCTCAATCAATATCCAATTTGTCAATATTAGAGTACCTAGATTGGAGTTCAAATTTAATCAAAGGAACCATCCCACATGTTATTGGTCAACTTCATCAATTGAGGATTTTGGATATTAGAAATAACAAGCTGTCTGGAATCATACCAAAAACAATTTCCAACATGTCTTCACTTGAAGAAATTCATTTATCTAATAACTCCTTATCAGGAGAAATTCCAAAAGGAATAGGTGATCTCACAGAATTGAGAATAGTGAACCTTCAATATAATGTACTATATGGCAACATAATGTCGACATTAATGTTGAACAGCTCATCGTTGCAAAAGTTGGCGCTTGGTTTTAATAATCTAACAGGAAAACTTCCAAGAAATGTATGTGAAGGGGTTCCAAAGCTTAGAGTACTATATCTTTATAGAAATGATATTTCTGGTGAGATGCCAACTGTTTGGCGTAATTGTAAAGAGTTGGAAGATTTAGAACTATCTTTCAATAATTTTGACAAAGGACCGTTGCCAGCTGACATTGGAAACTTGACCAATCTTCAATCTTTGTATCTTTCTACCATCAACTTGGAAGGTGAAATTCCATCTTCACTCTTCAGCATCTCTTCTTTGAGAGAGATCAACCTTGATGCAAATAATTTAAACGGAAGTCTCCCAAATGAGATGTGTCATCAACTTCCTCAACTTGAATCGTTTTCTCTATTCCTTAATCATTTTGGTGGAAGCATTCCACAATCTATTGGCAACTGCACATCACTACTTATATTAAATTTACAAAACAACTTTTTTACAGGTTTGATACCAATGAATATTGGCAATCTCAATCAACTTGAGCTTCTACAATTGGGAAATAACAGTTTGAGTGGACCTATTCCTTCAAAACTCTTCAACATTTCAACATTGGAATACTTGCATCTTGAACTAAATTCTCTCTCAGGGATGCTTCCATCAAATATGGGATTTGGTCTTCCTAACCTTCAAGAACTACATATGTATGCAAACAACTTTGTTGGAAGAATTCCAAATACTATATCCAATGCTTCAAATCTTCTTATAATTGACTTGAGTGTCAATCAATTCAATGGGATTATACCAAATGCTTTTGGAGATTTAAGTTTCCTTGAATCACTCATCTTAGGTGGCAATAATTTGACATTAATAGACGATTCTCTTGAATTCAATTTTCTCACTTCAATGACAAGATGCAGATATCTCACATATCTTGAAGTGTCAGAGAATAGTTTGCCATCAAAACTTCCCAAGTCCATTGGAAACTTAACTTTAGAATACTTTTGGGCAAATTCTTGTGGAATTAAAGGAAACATTCCACTTGAAATCGGAAACATGAGCAACTTGATTCAATTATCTCTGAGTAGGAATCATTTAAATGGACCAATCCCTAGCACAATTAAAGGATTAGATAAACTTCAGTCTTTGGATCTTGACTACAATGAACTGCAAGGATCCATCATTGATGAGGTTTGTGAAATTAGGATTTTGAGTGAATTGAATTTAACAAACAATAAGTTTTCAGGAGTGTTACCAACATGTTTGGGAAATATGACTTCTCTTAGAAAGCTTGACATAGGATCTAATAGGTTAACCTCTAAGATACCTTCCTCCTTTTGGTATCTCAGAGATATTTTAGAGGTAAACTTATCCTCCAATACTTTCATTGGAAATCTTCCACCTGAGGTCAATAATTTGAGAGCTCTTGTACTATTAGATTTATCAAGAAATCAAATTTCAAGCAACATTCCTTCAACCATAAGTTTCTTGACAACTTTAGAAACTCTCTCCTTAGCAAATAACAAATTGCAAGGAACTATCCCAACATCAATTGGTGAAATGGTAAGCTTGAGCTTCTTGGACTTATCTCAAAATCTTATAACAGGTGTCATTCCAAAATCCTTAGAGTCACTTTCTTATCTTAAACACGTCAATTTTTCATACAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCATAAATTTCACAGCTCAATCTTTTATGCATAATGAAGCCCTTTGTGGAAGTCCAAAATTACAAGTACCTCCATGTGATAAACAAACTAAGAAAAAGTCAATGTCAAAGAAATTAATCTTATGCTTATTGCCTATAATTATGTTGCCCATTTTGATTGTTGTATGCATAAAAGTTTGGCTGCATAAAAGGAAAAAAGTTGAAAATCCAATTGAAAGTGATTTATCAACTAAtctaggggttccaaaaaggatttcctattatgaacttgtgcaagcaaccaatggatttgatgagagtaatttacttggaaagggaggctttggatctgtgtatcaaggtgtgctttcgagtggggaaacagttgcaattaaagtaattaatttaaactctgaagcaacatcaaagagtttcgatgcagaatgcgatgcaatgcgcaatcttcgacatcgaaatcttgttcaaattatcaatagttgttcaaatgctgatttcaaatctcttgtgatggagtttatgtcaaatggaagtgtggagaaatggttatactcttataactattgtttagatttcttgcaaaggttgaatataatgatagatgtggcatctgcattggagtatcttcatcatggttcttcaataccagttgttcattgtgatttgaagcctagtaatgtgttacttgatgaagacatggttgcacatgtcactgattttggcatttctaaactcttggatgaaggacagtctaaaactcatactaagactttggctactcttggctatgttgcaccagagtatggttctaagggtatagtttctattaaaggagatgtttatagttatgggattatgcttatggagatgttcacaagaaagagaccaacagatgaaatgtttGCAGAAGAATTAACTTTGAAAACTTGGATTAGTGAATCAATGCCAAATTCAGTTGTGGAAGTTGTGGATTCAAATTTAGTCCAACAACATGGAAAAAGAATTGACGAAATTTCAGTTCATGTAACATCTATTTTGGGTTTAGCATTAAGGTGTTGTGAAGATTCACCTGAAGCACGAATTAATATGAAAGATGTAATGACATCTTTAATCAAAATCAAGACCTTATTCGTACGGTGA 3624 0.2712 MAKLYSRDSCLCILSLSLFYFLTCLVAIGSTNNITDEFSLLALKSSITLDPYHILSNWSISSSSCNWVGVTCDEHHGRVNALNLSNMGLEGTISPQLGNLSFLVVLDLHANNFHGELPRELLQLHRLKFLNLSYNDFVGEIPSRIGDLSKLQHLDIGHNNIVGFIPQSISNLSILEYLDWSSNLIKGTIPHVIGQLHQLRILDIRNNKLSGIIPKTISNMSSLEEIHLSNNSLSGEIPKGIGDLTELRIVNLQYNVLYGNIMSTLMLNSSSLQKLALGFNNLTGKLPRNVCEGVPKLRVLYLYRNDISGEMPTVWRNCKELEDLELSFNNFDKGPLPADIGNLTNLQSLYLSTINLEGEIPSSLFSISSLREINLDANNLNGSLPNEMCHQLPQLESFSLFLNHFGGSIPQSIGNCTSLLILNLQNNFFTGLIPMNIGNLNQLELLQLGNNSLSGPIPSKLFNISTLEYLHLELNSLSGMLPSNMGFGLPNLQELHMYANNFVGRIPNTISNASNLLIIDLSVNQFNGIIPNAFGDLSFLESLILGGNNLTLIDDSLEFNFLTSMTRCRYLTYLEVSENSLPSKLPKSIGNLTLEYFWANSCGIKGNIPLEIGNMSNLIQLSLSRNHLNGPIPSTIKGLDKLQSLDLDYNELQGSIIDEVCEIRILSELNLTNNKFSGVLPTCLGNMTSLRKLDIGSNRLTSKIPSSFWYLRDILEVNLSSNTFIGNLPPEVNNLRALVLLDLSRNQISSNIPSTISFLTTLETLSLANNKLQGTIPTSIGEMVSLSFLDLSQNLITGVIPKSLESLSYLKHVNFSYNRLQGEIPDGGPFINFTAQSFMHNEALCGSPKLQVPPCDKQTKKKSMSKKLILCLLPIIMLPILIVVCIKVWLHKRKKVENPIESDLSTNLGVPKRISYYELVQATNGFDESNLLGKGGFGSVYQGVLSSGETVAIKVINLNSEATSKSFDAECDAMRNLRHRNLVQIINSCSNADFKSLVMEFMSNGSVEKWLYSYNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVTDFGISKLLDEGQSKTHTKTLATLGYVAPEYGSKGIVSIKGDVYSYGIMLMEMFTRKRPTDEMFAEELTLKTWISESMPNSVVEVVDSNLVQQHGKRIDEISVHVTSILGLALRCCEDSPEARINMKDVMTSLIKIKTLFVR 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00430 1207 Gene3D Phosphorylase Kinase; domain 1 909 1001 - -
Car01g00430 1207 SMART LRR_typ_2 735 759 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 294 317 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 367 391 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 270 293 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 687 711 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 440 464 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 392 416 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 537 560 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 783 806 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 663 686 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 196 219 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 100 124 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 489 513 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 220 244 IPR003591 -
Car01g00430 1207 SMART LRR_typ_2 148 172 IPR003591 -
Car01g00430 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 198 332 - -
Car01g00430 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 330 436 - -
Car01g00430 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 147 238 - -
Car01g00430 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 400 1205 - -
Car01g00430 1207 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 17 148 - -
Car01g00430 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 17 148 - -
Car01g00430 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 330 436 - -
Car01g00430 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 400 1205 - -
Car01g00430 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 198 332 - -
Car01g00430 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 238 - -
Car01g00430 1207 SUPERFAMILY Protein kinase-like (PK-like) 907 1198 IPR011009 -
Car01g00430 1207 SMART LRR_sd22_2 735 754 - -
Car01g00430 1207 SMART LRR_sd22_2 440 466 - -
Car01g00430 1207 SMART LRR_sd22_2 639 662 - -
Car01g00430 1207 SMART LRR_sd22_2 148 174 - -
Car01g00430 1207 SMART LRR_sd22_2 759 774 - -
Car01g00430 1207 SMART LRR_sd22_2 196 222 - -
Car01g00430 1207 SMART LRR_sd22_2 783 809 - -
Car01g00430 1207 SMART LRR_sd22_2 687 708 - -
Car01g00430 1207 SUPERFAMILY RNI-like 487 826 - -
Car01g00430 1207 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Car01g00430 1207 Pfam Protein kinase domain 927 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 557 858 IPR032675 -
Car01g00430 1207 ProSiteProfiles Protein kinase domain profile. 926 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00430 1207 ProSitePatterns Protein kinases ATP-binding region signature. 932 954 IPR017441 GO:0005524
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 189 291 IPR032675 -
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 292 388 IPR032675 -
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 389 487 IPR032675 -
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 34 188 IPR032675 -
Car01g00430 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1045 1057 IPR008271 GO:0004672|GO:0006468
Car01g00430 1207 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515
Car01g00430 1207 SUPERFAMILY L domain-like 56 393 - -
Car01g00430 1207 Gene3D Ribonuclease Inhibitor 488 556 IPR032675 -
Car01g00430 1207 Gene3D Transferase(Phosphotransferase) domain 1 1002 1204 - -
Car01g00430 1207 SMART serkin_6 926 1205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00430 1207 Pfam Leucine rich repeat 271 331 IPR001611 GO:0005515
Car01g00430 1207 Pfam Leucine rich repeat 490 550 IPR001611 GO:0005515
Car01g00430 1207 Pfam Leucine rich repeat 666 722 IPR001611 GO:0005515
Car01g00430 1207 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Car01g00430 1207 Pfam Leucine rich repeat 737 796 IPR001611 GO:0005515
Car01g00430 1207 SUPERFAMILY L domain-like 341 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00430 Car-Chr1 3387206 3395882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00430 35 586 Receptor kinase-like Gene Family AT3G47570 35.445 8.89e-79 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Car01g00430 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00430 - K13420 gmx:100784397 1264.6