Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00429 ATGGGTCGAGATGGGGGCAAAGGTAGTGTTGAGGTATTTGATTCTGTTCATGAAGTGATGAATGAGAATTTAAGTGATTTCGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGATGGGTAAGGATTCAATCAATTTAGGATCCAATAAGGAGTTAAAGGAGGAGTGTGAGGAAGTTAAGGATCAAGAAAAGTGTGACGAAGAAAATATATGTGATGTATTGCATGAGGTTGATCAAGGAACTAGTTATAGTTCAAGCAGTTTGGTTAATGAGGAAGTGGTTGAGACGGTGGTTGTAATAGAGTCTGTTCTGAGCGAGTATATCAATGGAGAGGATAGGAAATTGGAAGAAAAAGTTGATGAATCAGGAGGGCTTAGCTTGGTTTCCATGAAAGAACCAAAAGGGGTGTCTGAAACTGATAATGATTCATGTGTGATTGATATGAAGTGCAGCAGCCACAAAGGGTTTTACGAGAATTCACAAGGTGAAAGGATTTGTAGGATTTGTCAACTGACTTCTGTGCAGGCGTCCGATGCAACAACAGTCGGAAATGCTAGTGATACAAGTGGAGATTTTATTCAACTTGGTTGTGCGTGTAAAGACGAGCTTGGCATTGCACACGTTCATTGTGCTGAGATGTGGTTTAAGCTCAAGGGAAACAGATTATGCGAAATATGTGGTGAGACTGCAAAAAATGTTTCGAGTGTTGCTAATACTGGATTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACAACATTAACTCACCCCCCAGGTTTGGTGGATGGTGGCGACGACAGCCGTTTTGTAATTTCTTGATGGTGTGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 885 0.4079 MGRDGGKGSVEVFDSVHEVMNENLSDFVEGVGEVGTSREMGKDSINLGSNKELKEECEEVKDQEKCDEENICDVLHEVDQGTSYSSSSLVNEEVVETVVVIESVLSEYINGEDRKLEEKVDESGGLSLVSMKEPKGVSETDNDSCVIDMKCSSHKGFYENSQGERICRICQLTSVQASDATTVGNASDTSGDFIQLGCACKDELGIAHVHCAEMWFKLKGNRLCEICGETAKNVSSVANTGFMEEWNDRRFMDNNINSPPRFGGWWRRQPFCNFLMVCLVIAFVLPWFFRVNMF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00429 294 PANTHER ZINC FINGER, RING-CH-TYPE 3 294 - -
Car01g00429 294 Pfam RING-variant domain 167 227 IPR011016 GO:0008270
Car01g00429 294 SMART ringv_2 166 228 IPR011016 GO:0008270
Car01g00429 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 3 294 - -
Car01g00429 294 SUPERFAMILY RING/U-box 162 230 - -
Car01g00429 294 ProSiteProfiles Zinc finger RING-CH-type profile. 159 234 IPR011016 GO:0008270
Car01g00429 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 239 IPR013083 -
Car01g00429 294 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00429 Car-Chr1 3370335 3373373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00429 147 293 C3H Transcription Factor Family AT5G05830 38.158 2.64e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00429 - - gmx:100791720 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00429 01 3370335 3373373 Car01g00429 01 3370335 3373373 ECH
Car06g00979 06 9525587 9528175 Car01g00429 01 3370335 3373373 PCT