Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00427 atggctgaggataagGAGATGTCTACCTCGGTTATCAATGGGAATGATTCTCTCACGGGTCACATAATATCTACAACAATTGGAGGCAAAAATGGAGAGCCCAAACAGACTATAAGTTACATGGCAGAGCGTGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCCATTAAGAAGGTTTTACAAGACCGAAGATATAAGAACCGTGAGCTACAGTTGATGCGTGTGATGGATCATCCAAATGTGGTCACTCTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAACTTTTTCTGAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATCGGGTCTTAAAGCACTATAACAATGCTAGTCAGAGAATACCAATCACCTATGTAAAACTTTATATGTACCAGATATTCAGGGGGTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACCGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACATCAAGTTAAGCTTTGTGATTTTGGAAGTGCAAAAATGCTGGTCCACGGCGAAGCTAATATCTCATATATATGTTCACGATTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGACATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCGGTGGACCAGCTCGTACATATCATTAAGGTGCTCGGAACACCCACCCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTTAGGTTTCCGCAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCTCGGCTTTTGCAGTACTCCCCAAGTCTGCGTTGCACTGCGCTTGAAGCATGTGCACATCCCTTCTTTGATGAACTTCGTGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCCCCTCTTTTCAACTTCAAACAGGAATTATCAGGAGCATCTCCAGAACTTGTTAATAAGTTGATACCCGACCACGTAAAGCGGCAAATAGGTCTACAATTTGTTCAACCGGCTGGATGA 1140 0.4272 MAEDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNASQRIPITYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKMLVHGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHVKRQIGLQFVQPAG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00427 379 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00427 379 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00427 379 PANTHER BNAANNG31110D PROTEIN 1 373 - -
Car01g00427 379 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Car01g00427 379 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00427 379 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 373 - -
Car01g00427 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Car01g00427 379 CDD STKc_GSK3 35 327 IPR039192 -
Car01g00427 379 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Car01g00427 379 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Car01g00427 379 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00427 Car-Chr1 3356971 3361091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00427 44 362 MAP Kinase Gene Family AT3G59790 35.629 5.02e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Car01g00427 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00427 K14502 - gmx:100779909 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00427 01 3356971 3361091 Car01g00427 01 3356971 3361091 ECH
Car01g00427 01 3356971 3361091 Car06g01665 06 16420918 16425434 ECH