Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00424 ATGCATCTAAGAAATAAAATGAAACCCTTTTTTAACTTCTTGATTCTCCTATCTCTAATTTCACTCGCAGAATCTTCATGCAACATTGAAAACCAGAACCTAGTATCAAAGGCTTTTCAATTTGTTTCTGGATTCAACACTTCGTTGTTCCAAACAAAAAGCTTCAACTGTTCAAATGGGGAGATTAAGATCATAGAACTTCCATCCAAAAACTTAAGCGGAAATATCTCATGGAGATATCTAAGGAACATGAGCAAGTTAGAAATTCTTGATCTTTCAGGGAATTTTCTACAAGGTCAAGTCCCAAACTGGTTTTGGGGAAGTTCAAGTTTATTGATAGTGAATCTCTCCAATAACAGATTCGGAGGAAGCATTTCATTGAAACCCATTTCAATTTCATCGCTACAAAATCTCAATCTTTCACACAACAGGTTCACAAATCAAGTTCAACTTTCATTTTTTCATAACCTTAAAATCATTGACCTTTCATACAACAATCTCAACACTTTACCTTCCGGATTTCAAAACCTCACCAACCTTAACCACCTTGATCTCTCAAACTGTAACATCAAAGGTAACATAAAACCCATTTCTTATCTTACTTCACTTTCTTACCTAAACCTTTCAAACAACACTTTGAACGGTAGTTTCCCTTCTGAATTCCCTCCTCTAAACAACATAAAATTCCTCAACATCTCACACAACAACTTCAAATCCTCCACTACTTTAGAAAAATTCAAAAAATTCGGAAAATCGTCGTTCATTCATGCAGGCAACAACTTCAATTTCAAAAACTACAACGCTTCAAAAACACAAAAGATTCATTCAAGTTCAAATTTGAAAAAGACAAAAGCAATTCACAGGGAGAAGAAAAAAAAGTCAAAACAAAAAAACATGATTGTTGTGGCAGCGTCCTCGGCGTCAGCGCTTGTTTTTGTCGTGTTGTGTGGTTGTGCAGTGTATATTTGTTACAGAAGAAAAAGGCAATTGAGGAAAAATAAGAAGTGGGCAATAGCGATATCGAAACCGATGATGCAATTAACGGTAAAGATGGAGAAATCTGGACCGTTCGAATTCGAAACAGAATCGGGAACATCGTGGGTGGCTGATCTGAAAGAACCGTCAACAGCAGCGGTAGTGATGTTTGAGAAGCCATTGATGAATATCACGTTCGTAGATTTAATGGCTGCCACGTCACACTTTGGGAAAGAATCTCAACTTGCGGAAGGTAGGTGTGGGCCCGTATATCGTGCTGTATTACCTGGTGATATACACGTGGCAATCAAGGTGCTTGAGAATGCCAGAGACGTTGATCATGATGACGCTGTTACAACTTTCGTTGACTTATCACAACTTAAGCATCCAAATCTGTTGCCTCTCTCCGGTTACTGTATTGCAGGGAAGGAAAAGCTAGTGTTATACGAGTTTATGTCAAACGGTGATTTAGGGAGGTGGCTACACGAGCTACCAACGGGTGAGACTAACGTGGAAGATTGGAGTAGCGACACGTGGGAGATTCAAAACGGCGTCGGTTCACGTGCCACGTCACCAGAAAAAATGGGTTGGCCGACACGACACCGTATTGCTGTGGGTGTGGCGCGTGGACTAGCTTTTCTCCACCACGCGGGATCCAAGCCCGTCGTTCACGGCCATCTTGTGACATCAAACGTCCTCCTCGCCGATGATTTCGAACCACGAATCGCCGATTTCGGATTTCGAAAATTTGGACAACAATGTCCTCCGAATTGCAGCACCGAAACAGACGTTTACTGCTTCGGTGCTGTTCTTATGGAGCTTTTAACGGGGAAGCCCGGTACGGCGGAGACGGTGGTTTGGGTTAGGAAGCTTGTGAGAGAGGGTCATGGAGTGAGAGCGCTTGATGAAAGGCTTAAACTCGGTGGTGGTGACTCAGAGAGTCAGATGGTTGAGAGTCTCCGAGTTGCGTATCTTTGTACGGCTGAGTCGCCAGGGAAGAGGCCCACTATGCAGCAAGTTTTGGGCCTTCTCAAAGATATTCATCTCAGAGTTGTACTCGATTGA 2040 0.4216 MHLRNKMKPFFNFLILLSLISLAESSCNIENQNLVSKAFQFVSGFNTSLFQTKSFNCSNGEIKIIELPSKNLSGNISWRYLRNMSKLEILDLSGNFLQGQVPNWFWGSSSLLIVNLSNNRFGGSISLKPISISSLQNLNLSHNRFTNQVQLSFFHNLKIIDLSYNNLNTLPSGFQNLTNLNHLDLSNCNIKGNIKPISYLTSLSYLNLSNNTLNGSFPSEFPPLNNIKFLNISHNNFKSSTTLEKFKKFGKSSFIHAGNNFNFKNYNASKTQKIHSSSNLKKTKAIHREKKKKSKQKNMIVVAASSASALVFVVLCGCAVYICYRRKRQLRKNKKWAIAISKPMMQLTVKMEKSGPFEFETESGTSWVADLKEPSTAAVVMFEKPLMNITFVDLMAATSHFGKESQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVTTFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSSDTWEIQNGVGSRATSPEKMGWPTRHRIAVGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGAVLMELLTGKPGTAETVVWVRKLVREGHGVRALDERLKLGGGDSESQMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHLRVVLD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00424 679 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Car01g00424 679 SMART LRR_typ_2 200 223 IPR003591 -
Car01g00424 679 SMART LRR_typ_2 154 176 IPR003591 -
Car01g00424 679 SMART LRR_typ_2 84 107 IPR003591 -
Car01g00424 679 SUPERFAMILY L domain-like 50 262 - -
Car01g00424 679 PANTHER KINASE, PUTATIVE-RELATED 9 678 - -
Car01g00424 679 Pfam Protein tyrosine and serine/threonine kinase 404 574 IPR001245 GO:0004672|GO:0006468
Car01g00424 679 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 678 - -
Car01g00424 679 Gene3D Transferase(Phosphotransferase) domain 1 580 675 - -
Car01g00424 679 Gene3D Transferase(Phosphotransferase) domain 1 477 579 - -
Car01g00424 679 Gene3D Ribonuclease Inhibitor 28 128 IPR032675 -
Car01g00424 679 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Car01g00424 679 ProSiteProfiles Protein kinase domain profile. 401 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00424 679 Gene3D Ribonuclease Inhibitor 129 305 IPR032675 -
Car01g00424 679 ProSiteProfiles Leucine-rich repeat profile. 134 155 IPR001611 GO:0005515
Car01g00424 679 SUPERFAMILY Protein kinase-like (PK-like) 379 670 IPR011009 -
Car01g00424 679 Gene3D Phosphorylase Kinase; domain 1 361 476 - -
Car01g00424 679 Pfam Leucine rich repeat 71 121 IPR001611 GO:0005515
Car01g00424 679 Pfam Leucine rich repeat 134 190 IPR001611 GO:0005515
Car01g00424 679 PRINTS Leucine-rich repeat signature 157 170 - -
Car01g00424 679 PRINTS Leucine-rich repeat signature 200 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00424 Car-Chr1 3336225 3339981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00424 64 672 Receptor kinase-like Gene Family AT5G07280 30.354 6.47e-69 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Car01g00424 PK_Tyr_Ser-Thr 4.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00424 - - gmx:100778920 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00424 01 3336225 3339981 Car01g00424 01 3336225 3339981 ECH
Car06g00981 06 9555601 9558974 Car01g00424 01 3336225 3339981 PCT