Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00412 ATGCCGGACTTTCACGATTCACTCACACCGCCGTCACGCCCTGTCCCCGTTCGCGAGGATTGCTGGTCTGAAGAAGCCTCATCTACTCTTGTAGATGCATGGGGTCGCCGTTACCTCGAACTTAACCGTGGTAACCTCCGTCAGAAAGATTGGCAAGATGTCGCCGACGCCGTTAACGCTCTTCACGGTCACACTAAGAAGACTCATCGTACCGATGTTCAGTGTAAGAATCGAATCGATACAATAAAAAAGAAGTATAAGATCGAGAAAGCTAGGGTTTCGTCTTCCAACGGTGTCGTTTCTTCCTCTTGGCCTTTCTTCGAACGATTAGATGCTTTGATCGGACCTAATTTCAGTGCGAAAAAATCTTCCTCTTCGCCATCGCCGTCGCCGCCGGTTGCTCTCCCTTTGTTACCTCATCGTAAATTCCATCCTTCCTTACCTGCGATTTCCGTGCCGCCGACCGCCGTGGCGCTTCCGCAGAAGCGATCTATTGCAGCGGCGATGGATAATGGTTACTTTCGGAGGAATTATTctgcggtagcggctgctgctgctgctgcAGAGGCCgatgaggaagaggaagaagaagaagaggaggaagtagaagaggaagaggaagtggaagtggaagtggaagaacatgaacacgaagaagaagggaggggaagtgaagtggaggaaggagataaggagagggaaggaatgaagaggTTGGCGAAGGCGATAGAAAAATTCGGTGAAATGTATGAGAGAGTGGAGGGACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTTCAGAGGATGAAGATGTTTATGGATACACAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACGATCTGGGTCTAATGACATGTATAGCTAG 921 0.392 MPDFHDSLTPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGVVSSSWPFFERLDALIGPNFSAKKSSSSPSPSPPVALPLLPHRKFHPSLPAISVPPTAVALPQKRSIAAAMDNGYFRRNYSAVAAAAAAAEADEEEEEEEEEEVEEEEEVEVEVEEHEHEEEGRGSEVEEGDKEREGMKRLAKAIEKFGEMYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMKMFMDTQVQLERIKRGKRSGSNDMYS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00412 306 MobiDBLite consensus disorder prediction 1 20 - -
Car01g00412 306 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Car01g00412 306 MobiDBLite consensus disorder prediction 188 214 - -
Car01g00412 306 MobiDBLite consensus disorder prediction 185 235 - -
Car01g00412 306 Gene3D - 22 88 - -
Car01g00412 306 MobiDBLite consensus disorder prediction 215 235 - -
Car01g00412 306 PANTHER OS05G0560600 PROTEIN 9 302 - -
Car01g00412 306 Coils Coil 180 218 - -
Car01g00412 306 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 302 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00412 Car-Chr1 3231127 3236932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00412 18 305 Trihelix Transcription Factor Family AT3G14180 31.025 3.92e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car01g00412 Myb_DNA-bind_4 4.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00412 - - gmx:100815241 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00412 01 3231127 3236932 Car01g00412 01 3231127 3236932 ECH