Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00404 ATGGATTATGGTTCTGATATTTCGAGGATAGTGTTCAATGCCCCTTCATATGGATTTGGTGCTTCAAATGGGATTTCAAGAGATGGGTTGGTCTCACCACAATCATTGGTTTTGGATACTGAGATGCGAGAACTAGTGAAGTCACCTCCAATGGTTGGAAAGAAAAAAATTTGTGATGCCAACAAAACTTTAGTGGCTTTGAAGAATCATAGGGAAGCAGAGAGGAGGAGAAGGAATAGAATTAGTGATCATCTTGCAAAACTTCGTGGACTTGTTCCATACTCCGCAAAGATGGACAAAGCAACCTTACTAGCTGAAGTTATTAAGCAAGTGAAGGAATTAAAAAAAAACACAGAGGAATCAAGCAAAGGTTATCTAATCCCAATGGATAATGATGAAGTTAAAGTTGAAATTGAACCATATGAAAATGGTGGATTAAATGGATCAATTCCCTATAAAGCATCTATTTGTTGTGATTATCGACCAGAGCTTTTATCTGATCTTAAACAAACTCTTGATACACTTAAAGTACAATTGGTAAGGGCAGAATTGTCAACATTGGGAGATAGAGTGAAAAATGAATTTGTCTACACATGTTGCAAAGCTGACATTTACAATGTTGAGTTATGTCAAATTATTGCAAGTAATGTTCACCAGGCACTTAGTTCTGTGTTGGATAAGGGTTCTACTTCATTGGATTATTCATTAAGAGTATCACATTCTTTCAATCAGCTGCAGCACCAGACATCTACTTTGTCATGTAACCATGAATTTTGTTCATGTTGA 786 0.3626 MDYGSDISRIVFNAPSYGFGASNGISRDGLVSPQSLVLDTEMRELVKSPPMVGKKKICDANKTLVALKNHREAERRRRNRISDHLAKLRGLVPYSAKMDKATLLAEVIKQVKELKKNTEESSKGYLIPMDNDEVKVEIEPYENGGLNGSIPYKASICCDYRPELLSDLKQTLDTLKVQLVRAELSTLGDRVKNEFVYTCCKADIYNVELCQIIASNVHQALSSVLDKGSTSLDYSLRVSHSFNQLQHQTSTLSCNHEFCSC 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00404 261 SMART finulus 71 120 IPR011598 GO:0046983
Car01g00404 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Car01g00404 261 PANTHER TRANSCRIPTION FACTOR BHLH30 23 245 IPR045847 GO:0003700|GO:0006355
Car01g00404 261 Gene3D - 65 124 IPR036638 GO:0046983
Car01g00404 261 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Car01g00404 261 PANTHER DNA BINDING PROTEIN-LIKE 23 245 - -
Car01g00404 261 Coils Coil 165 185 - -
Car01g00404 261 CDD ACT_UUR-ACR-like 155 196 - -
Car01g00404 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00404 Car-Chr1 3164403 3167353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00404 55 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.931 1.47e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g00404 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00404 - - gmx:100804756 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00404 01 3164403 3167353 Car01g00404 01 3164403 3167353 ECH
Car01g00404 01 3164403 3167353 Car06g01661 06 16384640 16390953 ECH