Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00380 ATGAATTTTTATGCTCAAACATCAAACTCAGTTTCAAATATTTTGCTTTGGCTTCCTCTAATAATCTCACTTCTCCTACTCCAATGTCTAGCCAATAGTTCCCAAAATACAAGCGTTGGTGTGATAATTGATTTTAATTCTGTAACTGGGAAGCAACAGAGAACAGCCATGCAAATTGCAACTCAAAATTTCAATAATTATTCAAACACTCATAACTTAATCCTTTTCTTCAAGGACTCTGGTAGAAACCCTATACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAGAAGAAAGTTAGAGTCATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAGTTTCAAGTACCAATAATTTCATTTTCTTCTCCATCATTAGTCCCTTCATCATCAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGACTCAAAATCACACAGCACAAATGAACTTCATAGCTGATATTGTCCATGCTTTCAACTCTCAAAAGGTTATAGCTATATATGAAGACAACCCTTATAGTAATGATTACGGAATTTTAACCCTCTTATCTGACGCTCTCGAAAAGGTTAACTCGAAGATCGAGTATCAATTAGTTCTTCCACCGTTCACTTCTTTGTCTGATCCAAAAGGGGTTGTTCTTGATGAATTGTTGAAGCTGTTGCCACAAAAATCGCGTGTTTTTGTCGTACTTCAAGCATCATTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAGAGAATCATGTTGGATAATCAATGAGGAGATTACAAGCATGTTGGCATATGTAGATAAATCTGTTTTATCTTCTATGAAAGGTGTTTTGGGAATCAAAACCAACATTTCTACAAGTTCCAGTGGTTATACTCAGTTGCAAGAAAATTTCCAAGCTGATCCTACAGAAACAGTTGAGTCCAGACCAGGATCAAATGCTTTGCTAGCTTATGATAGCATTACAATTGTTACAAAGGCTTTGGAGAAAATGAATACTAACTCTAGTAGCTCAAGGATTTTATTGGAGGAAATGTTATCTTCTAATTTCAATGGCTTAAGTGGTGATATAAGATTCAAAGAAAGACAACTATCCTGCAACCCAATATTAAGTGTCATAAAAGTGGTTGATAATGATAAGAAACATATGGAATTGGATTTTTGGAATCCAAAGTTGAAGTTTGCTAGATCTCTTATAGAAAGCATAAATGACTCTACACCTAAGACATGGAAAGTACATACAAATACAAACCCTTTAAAAGTTGCAATTCCTATGAATCCTGCATTTGATAACTTTTTGAAATTCTCACCAAATGAACCTCCTACTGGTTTTTGTATTGAACTTTTCAAAGAGATCAGAGAAATTCTGAGTGAGCAATATTTTGGCCTTCCCTATGAATTTCACGCCTTCAATGAATCTTATGATGAACTTATGTATGAAGTCATAAATGAGCTCTATGATGTTATTGTAGGAGATGTAACAATACTTGCCAACCGATCAAAGCTGGTATCATTCACTCAACCATATACTGAGTCAGGCTTATCACTCATATTTCCAGAAGAGACTGAAGGGTCAGCATGGTTGTTTATGAAACCATTTAGCATGGAAATGTGGATTGCAACGGTTGGTATCCTTATCTACACAATGATTACCATTTGGTTCTTGGAACATCACTTGAATCCTGAATTTGGTGGACCATTGAAAACCCAGATCAGCACCACTTTGTGGTTTGCTTTTTCTACTCTATTTTTTGCTCATAAGGAAAAAATAAACAGCAACTCTGCAAGAATAGTAGTTGGAGTTTGGTTATTTCTTGTGTTTGTGCTAACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCAAAAGTTGAGGTCTGATAGAGACATTGAATGGCTTAAACAAAACAATTTACCAGTTGGTTGTGATAACAGCAGTACCTTTGTAAAGGACTACTTGGTTCAAGTGTATAATTTCCCTAGGCCCCAAGTTATAGATGTTGAGGATGAACGTGACATGGTGGATAAATTCAAGAGCAAAAAAATTGCTGCTCTCTTTGTTGAGAGTCCATATGAGAAGGTTTTCTTAAATAAGTACTGCAAAGACTACACAGCAACTACAGCAGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGATCCAATGGCCAAAGACTTTTCTGAAGCCATTTTAACACTTGCAGAAAATGGAAAACTAAAAGCTTTGGAAGAGACTTGGTTAACACCTTCCAACGAATGTTCAAACAACTCACCTTCTCCAGAAACTGAGAGCCTGACCGTTGGCAAATTTTGGGGACTCTATATCATATGTGCTACCACTTCCACTATCTGCTTAATACTAGCTTTATTGAAGAAGTATTTCCATTACCATAACCACTATGAAGAGGAAGCTCAACTTTCTCAACGAAATGTAACCACTGAATCTGatgatgatcataataataataatgataTGAAGAGAGTTTTAAGAAGTGGTACTGGCTTATACAATGGAAATCTGATGGCTTTAAATAAATCTGCAACTTTTGGTGGCAGTGTATTACAAGGTGTACGCCGTCGAAATTCGCCAAGGTTGGAGAGTGTAACCATTTCTGATGAACTGAACAATCCACAACGCTCCCAATCAGCTGTCATAGAAATGATGTAA 2721 0.362 MNFYAQTSNSVSNILLWLPLIISLLLLQCLANSSQNTSVGVIIDFNSVTGKQQRTAMQIATQNFNNYSNTHNLILFFKDSGRNPIQAASAAEELITKKKVRVIIGMETWQEAALVADLGAKFQVPIISFSSPSLVPSSSMQLRWPFLIQMTQNHTAQMNFIADIVHAFNSQKVIAIYEDNPYSNDYGILTLLSDALEKVNSKIEYQLVLPPFTSLSDPKGVVLDELLKLLPQKSRVFVVLQASLPMVNHLFREAKKIGLLERESCWIINEEITSMLAYVDKSVLSSMKGVLGIKTNISTSSSGYTQLQENFQADPTETVESRPGSNALLAYDSITIVTKALEKMNTNSSSSRILLEEMLSSNFNGLSGDIRFKERQLSCNPILSVIKVVDNDKKHMELDFWNPKLKFARSLIESINDSTPKTWKVHTNTNPLKVAIPMNPAFDNFLKFSPNEPPTGFCIELFKEIREILSEQYFGLPYEFHAFNESYDELMYEVINELYDVIVGDVTILANRSKLVSFTQPYTESGLSLIFPEETEGSAWLFMKPFSMEMWIATVGILIYTMITIWFLEHHLNPEFGGPLKTQISTTLWFAFSTLFFAHKEKINSNSARIVVGVWLFLVFVLTSSYTANLSSLLTVQKLRSDRDIEWLKQNNLPVGCDNSSTFVKDYLVQVYNFPRPQVIDVEDERDMVDKFKSKKIAALFVESPYEKVFLNKYCKDYTATTAAYKFGGMGFVFQKGDPMAKDFSEAILTLAENGKLKALEETWLTPSNECSNNSPSPETESLTVGKFWGLYIICATTSTICLILALLKKYFHYHNHYEEEAQLSQRNVTTESDDDHNNNNDMKRVLRSGTGLYNGNLMALNKSATFGGSVLQGVRRRNSPRLESVTISDELNNPQRSQSAVIEMM 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00380 906 Pfam Ligand-gated ion channel 767 797 IPR001320 GO:0015276|GO:0016020
Car01g00380 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 903 - -
Car01g00380 906 Gene3D - 425 539 - -
Car01g00380 906 Pfam Receptor family ligand binding region 54 387 IPR001828 -
Car01g00380 906 PANTHER GLUTAMATE RECEPTOR 2 903 - -
Car01g00380 906 SMART GluR_14 433 767 IPR001320 GO:0015276|GO:0016020
Car01g00380 906 Gene3D - 153 300 - -
Car01g00380 906 SUPERFAMILY Periplasmic binding protein-like II 419 766 - -
Car01g00380 906 CDD PBP1_GABAb_receptor_plant 38 411 IPR044440 -
Car01g00380 906 PIRSF IGluLR_plant 9 852 IPR017103 -
Car01g00380 906 SUPERFAMILY Periplasmic binding protein-like I 36 458 IPR028082 -
Car01g00380 906 MobiDBLite consensus disorder prediction 823 842 - -
Car01g00380 906 Pfam Bacterial extracellular solute-binding proteins, family 3 450 766 IPR001638 -
Car01g00380 906 Gene3D - 540 670 - -
Car01g00380 906 Gene3D - 48 376 - -
Car01g00380 906 Gene3D - 687 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00380 Car-Chr1 2988782 2994176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00380 24 817 Ion Channels AT2G29120 32.627 6.85e-127 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00380 - - mtr:MTR_2g015290 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00380 01 2988782 2994176 Car01g00380 01 2988782 2994176 ECH