Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00379 ATGCATTACCTTTCAAGAATTTGGTTATTCTTTTTCTTACTCACCCCTTTTGTTCACATTTATGGTATCAAAGATGAGACTAAGAATTCAGATAACAAAGTCATATCCATTGGGGTGATTATTGATGTTAATTCTCGTATTGGGAAAGAACAAGAAGTAGCAATGAACATTGCAGCCCAAAGTTACAACAACATTTCAAAGAACTACAAGTTAGCTCTCTATTTTCAGAATTCCACCAAGGATCTCCTCAAAGCCATCACACTTGCTGAAGAGATGATTAATATGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTATAGTAGCAGAAATAGGAAGCAAAGCTCAAGTACCTGTCATATCCTTTGCAGCACTAACCATAACCCCGCCATTGATGAAAGTTAGATGGCCTTTTCTGGTGAGACTAGCTAACAATGGTACACCATATATAAAATCCATTGCAGAAATAGTGCAGGCTTATAGCTGGAAGAGAGTAGTAGCCATCTACGAAGACGAAGGGTATGGTGGAGATAATGGAATGCTAGCCCTACTAGCTGAGGCCCTTCAGGATGTTGGTTCAATGATTGAGCACCACTTAGTCCTTTCACCAATTTCTTCTCTACATGATCCACAAGAGCTAGTTAGCGAAGAGATTATTAAGTTAAATCAAACGCAATCTCGGGTGTTCATTGTGCTGAAATCATCTTTAGAAATGGCAATTCATTTGTTCAAAGAGGCTTCAAAAGTTGGACTAGTGGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGACTCCGTCAATAAATCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATTAAGACCTATTATTCAGAAAGAAGCAAGGAGTATCAAGAATTTGAGGCTCAGTTCAGGAGAAATTTTCGGTCCAAGAATCCCGAAGAAGATAACCGCTACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTAACATTGTAACTCAAGCTATCAACAGAATAACCAATAGCAGCTCAAAGACTTTACTAAGAGAAATACTGTCGAGCAATTTCCTTGGTTTAAGTGGCCATATTCAACTTGAAGCTGGCCAACTCATGCAGAATAATCTTGTCCTAAGGATAGTAAATGTAGCTGGAAAGAGTTACAAAGAATTATGCTTTTGGACTCAAAAACATGGCTTCACTACAACCCTACATGCAGGACAAGGTGGAAATACAGAATGTCTCAAAGGTGTACGCTGGCCTGGGAATTTGGACAGAGATCCAAAGGGCTGGAACATGCCTACTAAACAAAACCAATTGAAAATTGCAATCAGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAGTATGGCCATAACAAAACTCATGATAAATATAGTGGATTCTGCATTGAAATTTTTGAGAAAGTACACAGACTTTTGGGGTATGATCTGCCATATAAGTATCATTCCATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGACTTTTGATGCTGTTATTGGGGACATGACTATAATAGAGGAAAGATTGCAGTATGTGGATTTTACAGTACCATATGCAGAATCAGGATTGTCAATGATAGTTCCAGCAGCATCTGAAGAGTCAGCATGGATGTTTACGAAGCCGTTTAGCTGGGAATTGTGGCTGGTTACAGGTGCAATCACGATTTACACAATGTTAGTTGTTTGGTATCTTGAAAGAGAACCCAATCCAGAATTTCATGGAAACTGGAAGATCCAGCTCAGCACAGCTCTTTGGTTTACCGTCTCCTCTTTGTTCTTTGCTCATAGTAAGTATCAATCTCAAACTTTTTTTCAAATTTTGATGCTAAATGAAATTACGCAACACAAACAAACCAGACTTTGA 1920 0.3854 MHYLSRIWLFFFLLTPFVHIYGIKDETKNSDNKVISIGVIIDVNSRIGKEQEVAMNIAAQSYNNISKNYKLALYFQNSTKDLLKAITLAEEMINMQKVQVIIGMHTWPEAAIVAEIGSKAQVPVISFAALTITPPLMKVRWPFLVRLANNGTPYIKSIAEIVQAYSWKRVVAIYEDEGYGGDNGMLALLAEALQDVGSMIEHHLVLSPISSLHDPQELVSEEIIKLNQTQSRVFIVLKSSLEMAIHLFKEASKVGLVDKESVWIIPESITNLLDSVNKSAISYMEGALGIKTYYSERSKEYQEFEAQFRRNFRSKNPEEDNRYPGFYALQAYDSINIVTQAINRITNSSSKTLLREILSSNFLGLSGHIQLEAGQLMQNNLVLRIVNVAGKSYKELCFWTQKHGFTTTLHAGQGGNTECLKGVRWPGNLDRDPKGWNMPTKQNQLKIAIRSRTSFSKFVKVEYGHNKTHDKYSGFCIEIFEKVHRLLGYDLPYKYHSIDGTYNDLVQLVYNKTFDAVIGDMTIIEERLQYVDFTVPYAESGLSMIVPAASEESAWMFTKPFSWELWLVTGAITIYTMLVVWYLEREPNPEFHGNWKIQLSTALWFTVSSLFFAHSKYQSQTFFQILMLNEITQHKQTRL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00379 639 CDD PBP1_GABAb_receptor_plant 36 409 IPR044440 -
Car01g00379 639 Gene3D - 37 378 - -
Car01g00379 639 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 628 - -
Car01g00379 639 Gene3D - 555 628 - -
Car01g00379 639 SUPERFAMILY Periplasmic binding protein-like I 32 436 IPR028082 -
Car01g00379 639 Pfam Bacterial extracellular solute-binding proteins, family 3 468 550 IPR001638 -
Car01g00379 639 SUPERFAMILY Periplasmic binding protein-like II 425 573 - -
Car01g00379 639 SMART GluR_14 444 638 IPR001320 GO:0015276|GO:0016020
Car01g00379 639 Pfam Receptor family ligand binding region 52 379 IPR001828 -
Car01g00379 639 Gene3D - 439 554 - -
Car01g00379 639 PANTHER GLUTAMATE RECEPTOR 3.4 17 628 - -
Car01g00379 639 Gene3D - 150 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00379 Car-Chr1 2982169 2986176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00379 7 614 Ion Channels AT2G29120 30.710 4.18e-98 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00379 - - mtr:MTR_2g015270 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00379 01 2982169 2986176 Car01g00379 01 2982169 2986176 ECH