Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00377 ATGGAGAATATTCACAATAGTAATAATAATCATCATGCAACTAATTCTAATGAAATTCTTGAGAGTGTTTGGGCTAAGATTATCAACAATGATGCAAGAACAACAAATGGAAATGCAATAGAATGTTCTAACACATGGGAAGAATTGCCTAATCTTCAAAGACTTCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTTTGGGAAGAAATTTTAGCAACAAGTATTAATAAAGAAGATTCTTGCAATTACAAAAACATTGAAATTGGAAGTGTTGGTATTAAATCAAAGAAAAAAGTAGAAGAATGTGTGAGAAAAGAGAAAGCAAAACATTATAGAGGTGTAAGGAGAAGGCCATGGGGAAAATATGCAGCTGAGATAAGAGATTCATCAAAGAAAAGTGCAAGAGTTTGGCTTGGTACATTTAATACAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTTCAAAAGCATGTCTTAATTTTCCAATTGAAAAAGTTACAAATGCTTTAAGAACATGTGGTGAGAAAGGATTAATTGATGATGTTAGTACTATTTATGATTTTGGAAACAGAGAAAGTTTGTTGGATTCTAGGAAGAGAGGGTTAAGAGACAGAGGAGAGTTTGTTGATGTGATGAATGAAGAACCTGCAATGAAAAAGATTGCAGGGTTGGAACATATGTTAGAAAATGATGATGATGTTTTTGTATTTCAGGACCTTGGAAGTGATTATTTGGACAGTTTGTTGTCTTCTTTTTGA 783 0.3295 MENIHNSNNNHHATNSNEILESVWAKIINNDARTTNGNAIECSNTWEELPNLQRLPSLGRWISMGADFWEEILATSINKEDSCNYKNIEIGSVGIKSKKKVEECVRKEKAKHYRGVRRRPWGKYAAEIRDSSKKSARVWLGTFNTAEEAALAYDKAALRIRGSKACLNFPIEKVTNALRTCGEKGLIDDVSTIYDFGNRESLLDSRKRGLRDRGEFVDVMNEEPAMKKIAGLEHMLENDDDVFVFQDLGSDYLDSLLSSF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00377 260 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 260 - -
Car01g00377 260 CDD AP2 111 171 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Car01g00377 260 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 SUPERFAMILY DNA-binding domain 112 171 IPR016177 GO:0003677
Car01g00377 260 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Car01g00377 260 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 21 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00377 Car-Chr1 2953114 2953896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00377 18 260 AP2-EREBP Transcription Factor Family AT4G18450 35.974 1.17e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g00377 AP2 7.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00377 - - lang:109334345 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00377 01 2953114 2953896 Car01g00377 01 2953114 2953896 ECH