Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00376 ATGGTTTTATTATCCCAATCCCAAACAGAATTACCCTTAAACGAGAATGACTCACAAGACATGGTCATATACCAAGTTCTAAACGAAGCAAATTCTCTAAACAACACATTTGTACCACAAAGGAATCACCAACAAGCTTTGAATGGCTTAGAGCCAACAAGGACTATTGCCAAGAAGCACTACAGAGGTGTGAGGCGCCGTCCTTGGGGGAAATACGCAGCCGAGATTCGTGACTCGGCTCGACATGGAACAAGAATATGGCTTGGAACATTCCAAACAGCTGAAGAAGCTGCTTTGGCTTATGATAGAGCTGCTTTTAAAATGAGAGGTTCAAAGGCTTTGCTCAATTTCCCAGCTGAAATTGTTGCTGCAGCTTCCGTGCAGATCAAGTTGTCTAATTCTATGATCAACATCAATAATAATAATCGTGAGTCTGAATCAAGTGCTACTAGCTCTGGCTCAATTTCCAATTCCAATTCCAAAAGGACTCGGTTTGAAAAGAGAGAAGATTAA 513 0.4133 MVLLSQSQTELPLNENDSQDMVIYQVLNEANSLNNTFVPQRNHQQALNGLEPTRTIAKKHYRGVRRRPWGKYAAEIRDSARHGTRIWLGTFQTAEEAALAYDRAAFKMRGSKALLNFPAEIVAAASVQIKLSNSMININNNNRESESSATSSGSISNSNSKRTRFEKRED 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00376 170 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Car01g00376 170 MobiDBLite consensus disorder prediction 141 160 - -
Car01g00376 170 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Car01g00376 170 MobiDBLite consensus disorder prediction 141 170 - -
Car01g00376 170 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Car01g00376 170 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Car01g00376 170 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 141 - -
Car01g00376 170 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Car01g00376 170 PANTHER DNA-BINDING DOMAIN 6 141 IPR044808 GO:0003700|GO:0009873
Car01g00376 170 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Car01g00376 170 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Car01g00376 170 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00376 Car-Chr1 2948446 2949313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00376 11 132 AP2-EREBP Transcription Factor Family AT3G23240 51.639 3.60e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g00376 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00376 K13433 - gmx:100811533 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00376 01 2948446 2949313 Car01g00376 01 2948446 2949313 ECH