Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00374 atGGCTTCTTCTAACAGACACTGGCCAAGCATGTTTAAGTCTAAGCCTGCCTGCAACCCTCATCACCAATGGCAACATGACATCAACTCCTCTCTCATCTCTTCTTCTTGCCATAGAACCCCTTACTCTTCAGGTTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGGTGGAATCCAAAACCAGAACAAATCAGAATATTGGAAGCAATATTCAACTCAGGTATGGTGAATCCACCAAGAGATGAAATAAGGAAGATAAGAGCACAGTTACAAGAGTATGGTCAAGTTGGTGATGCCAATGTTTTCTATTGGTTCCAAAACCGCAAATCTAGAAGCAAACATAAGCTTCGCCATCTTCAAAACCAAAACTCTTCAAAGAATCAACAAAATATTCTAAACCAAGAACCACCAACACAACAACAAAACCCTAATCCTATTtcatcatcacttcctcaaatcactccaccttcatcttcatcatcttcctcTGAGAAATCACCACCAAAAGAAATAATACCATCCAAAGTTTTTTCTCTTGGATTCTCTAACATCAATGATGTTGTGCCTAATTCTCCAACTACTTCTGTGAACCAAACATATCTTCATTCTCAAAATGAAACAACTCTTCTTCCACCACCACCACAACAACAACAAGTAGCTTCTGCAACAAATGAAACTAATTTCTTCTTTCCAATGCAACAGCATGGACAAGGAATAGTGCTACCTAACAATGTTGTTACATCACAAGGGTTTTGTTTCTCTGAACTCTCTAACATGGTTCATGCTCAACCACACAACACTGGTCATTGCACTAGTTTTCTTCTTAGTGAAATCATGAACCATGGTGCTAATTCCTCAAAGAAAGATCAAGATCAGGATAATAAGTCTGTTAAAATAATGCACCAAATTCCACACTTTAACTTTTGTTTCACTCCCACAACTAGTACTACTACTGTTGTACCTCCTACTACTTCCTCCACCATCACTGTTCCATCCCCCATCATTTCTCATGCTCAAGGGCATGGAGAAACAGGTGTTACAGCAGCAAGATCAATGGTGTTCATTAATGATGTTGCGTTTGAGGTAGCATCTGGACCTTTCAACGTTCGTGAAGCATTTGGTGATGAAGCTGTACTCATCCATGCCACTGGTCAACCTGTTTTAACTAACCAATGGGGTGTCACTCTCCAATCACTCCACCATGGTGCATGTTACTATCTGATATAG 1227 0.3839 MASSNRHWPSMFKSKPACNPHHQWQHDINSSLISSSCHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNSSKNQQNILNQEPPTQQQNPNPISSSLPQITPPSSSSSSSEKSPPKEIIPSKVFSLGFSNINDVVPNSPTTSVNQTYLHSQNETTLLPPPPQQQQVASATNETNFFFPMQQHGQGIVLPNNVVTSQGFCFSELSNMVHAQPHNTGHCTSFLLSEIMNHGANSSKKDQDQDNKSVKIMHQIPHFNFCFTPTTSTTTVVPPTTSSTITVPSPIISHAQGHGETGVTAARSMVFINDVAFEVASGPFNVREAFGDEAVLIHATGQPVLTNQWGVTLQSLHHGACYYLI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00374 408 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Car01g00374 408 Gene3D - 54 120 - -
Car01g00374 408 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Car01g00374 408 MobiDBLite consensus disorder prediction 113 170 - -
Car01g00374 408 CDD homeodomain 53 115 IPR001356 GO:0003677
Car01g00374 408 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
Car01g00374 408 SMART HOX_1 52 119 IPR001356 GO:0003677
Car01g00374 408 MobiDBLite consensus disorder prediction 121 168 - -
Car01g00374 408 MobiDBLite consensus disorder prediction 40 60 - -
Car01g00374 408 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 408 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00374 Car-Chr1 2916617 2919195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00374 1 121 Wox Gene Family AT2G33880 86.179 2.96e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Car01g00374 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00374 - - cam:101490093 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00374 01 2916617 2919195 Car01g00374 01 2916617 2919195 ECH