Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00350 ATGGGTTTGGAGTACTATGAGATTTTGGAGGTTGAAAAGAATGCAACGGATGAAGAGTTGAAGAAAGCATATAGAAAACTTGCCATGAAATGGCACCCTGATAAAAATCCCAATAATAAAAAAGAGGCTGAGACTCAATTCAAACTCATATCTGAAGCATATGAGGTTCTAAGTGATCCACAGAAGAGAGCAATTTATGATCAGTATGGAGAAGGTGGCCTTAAAAGTGGAATGCCACCAACAGATGATGGTGCGGCTTCATACTTCCAAACTCAAGATGGCCCAAGATTTAGGTTCAGTCCAAGAAGTGCAAATGGTATCTTTGCAGAAGTTTTTGGCTTTTCAAATACATATGGAGGAATGGGAATGAGGGGTGGCAGCTGCAGAGGCATGAGGGGCGGGTCGTGGGTGTCAAGGTCTTTCGGTGACATTTTTGGCAAAGACGTATTCAGAGAAAGCAGAAACTCGAGTCAAGGTCCACGGCGGAAGGCGCCTCCGATTGAAAATAATTTACCTTGCAGCCTTGAGGAACTTTATAAGGGTACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCATACGCAAGCGGTAAAACTCTACCTGTGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACATTCCCAGAAAAAGGAAATGAGCAGCCAAATGTTATTGCTGCAGATATCGTATTCATTATAGATGAGAAACCTCACAGTATATTTACAAGAGAAGGTAATGATTTGGTTGTAACACAAAAGATATCAGTTGCAGAAGGTGAAGCTCTAAAAAGCTACACATTCCAACTTGTTACTTTGGATGGCAGGGGTCTGACCATTTCCATAGACAATGGAATTGATCCGAACTATGAAGAAGTGGTCGTTGGGGAAGGGATGCCTATTTCGAAAAATCCTTCACAGAGGGGTAATCTTAGGATCAAATTCAATGTCACATTCCCAAGCATGGTTGATGCTGAAGCTCAAAGCCTGAACTAA 1017 0.4149 MGLEYYEILEVEKNATDEELKKAYRKLAMKWHPDKNPNNKKEAETQFKLISEAYEVLSDPQKRAIYDQYGEGGLKSGMPPTDDGAASYFQTQDGPRFRFSPRSANGIFAEVFGFSNTYGGMGMRGGSCRGMRGGSWVSRSFGDIFGKDVFRESRNSSQGPRRKAPPIENNLPCSLEELYKGTTKKMKISREIAYASGKTLPVEEILTIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHSIFTREGNDLVVTQKISVAEGEALKSYTFQLVTLDGRGLTISIDNGIDPNYEEVVVGEGMPISKNPSQRGNLRIKFNVTFPSMVDAEAQSLN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00350 338 Gene3D - 166 244 - -
Car01g00350 338 SMART dnaj_3 3 62 IPR001623 -
Car01g00350 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 257 IPR008971 GO:0006457|GO:0051082
Car01g00350 338 CDD DnaJ 4 59 IPR001623 -
Car01g00350 338 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 334 - -
Car01g00350 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Car01g00350 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Car01g00350 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Car01g00350 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Car01g00350 338 CDD DnaJ_C 165 328 - -
Car01g00350 338 Pfam DnaJ C terminal domain 167 327 IPR002939 -
Car01g00350 338 Gene3D - 246 328 - -
Car01g00350 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 334 - -
Car01g00350 338 Pfam DnaJ domain 4 67 IPR001623 -
Car01g00350 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Car01g00350 338 SUPERFAMILY Chaperone J-domain 4 73 IPR036869 -
Car01g00350 338 Gene3D DnaJ domain 3 124 IPR036869 -
Car01g00350 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 335 IPR008971 GO:0006457|GO:0051082
Car01g00350 338 Coils Coil 6 26 - -
Car01g00350 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00350 Car-Chr1 2732691 2735579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00350 5 69 C2H2 Transcription Factor Family AT1G74250 42.029 1.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00350 K09510 - gmx:100794650 488.804