Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00341 ATGGCGCCCAAGGATAAGaacggtggcgttaaagtgaacggtaacgttaacgGCGTCGTTAAAGAGGTTCATTTTCGAGGAGTCAGGAAGAGGCCATGGGGAAGATACGCCGCCGAGATTAGAGATCCGGGAAAGAAGAGCCGCGTTTGGCTCGGCACTTTCGACACGGCGGAAGAGGCTGCACGAGCCTACGACACCGCCGCACGTGATTTCCGTGGTTCTAAGGCTAAAACTAACTTCCCTTACCCTTCCGAAAATATAAAGATCCAAAGTACTAGCCAAAGCAGCACCGTTGAATCCTCCAGCCGCGACCGTGACGCCGCCGCCGATGAATCTTATCCGCTTGACCTTAACTTATCCCCCGCTATCAACGGCTCCGTTCAGTTTCCTTTTCAGCATCGTTTCCCGTCGATGCCGCCAGCTGACAAGTTTTTTTATTATGACACCGTCGTACGCGCCGGCATGGTGAATTCCCGTCCTTGCAAGGGCTACGGATACGATTACAATCGTCCGGCGGCGGTGAGTTTGTTGGATGTGACGACAGCACAAAGTGACTCCGATTCGTCGTCGGTGATCGATCTGAACCACCGTGAATACGATTATAAGGCAGTTAGAAAGTTCGATCTCGATCTTAACCATCCTCCTCCGATGGATATGGCATGA 663 0.4962 MAPKDKNGGVKVNGNVNGVVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARDFRGSKAKTNFPYPSENIKIQSTSQSSTVESSSRDRDAAADESYPLDLNLSPAINGSVQFPFQHRFPSMPPADKFFYYDTVVRAGMVNSRPCKGYGYDYNRPAAVSLLDVTTAQSDSDSSSVIDLNHREYDYKAVRKFDLDLNHPPPMDMA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00341 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 202 - -
Car01g00341 220 MobiDBLite consensus disorder prediction 79 102 - -
Car01g00341 220 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Car01g00341 220 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Car01g00341 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 202 - -
Car01g00341 220 MobiDBLite consensus disorder prediction 74 109 - -
Car01g00341 220 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00341 Car-Chr1 2671244 2672461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00341 1 217 AP2-EREBP Transcription Factor Family AT5G44210 40.175 6.57e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g00341 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00341 K09286 - gmx:100170742 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00341 01 2671244 2672461 Car01g00341 01 2671244 2672461 ECH
Car06g02004 06 20018220 20019941 Car01g00341 01 2671244 2672461 ECH