Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00340 ATGGATTCTTCATCTTCATCTTCTTCAGCTAACCGCGAAGGACACTACAGAGGTGTTAGAAAGCGACCATGGGGACGCTATGCAGCTGAGATTCGCGATCCTTGGAAGAAGACACGTGTTTGGTTGGGAACATTTGATACTCCCGAGGAAGCTGCTCTTGCTTACGACGGCGCCGCTCGTTCCCTCCGTGGAGCTAAGGCTAAAACTAACTTTCCTCCGGCGCCGGTTGCCGCTGGTCTTTGTCTTGATCTCAACGCTCCTTCATCTGATCACCGATGGCCGCCTGTCCCTTCGCGCAGCTTCGTCGTGACTGAGTTTCTTCAGACTGGAGTTCTCAAGGATTTTAACACTCCTCAGCCTCCACCTGTTGCTGCGGTCGCTGGACTTAGGCGTCATGACGGTGCTTTTTCTGTCTCCGGTGGAGTTCAGGTGGCTGAGCACACCTCAACTGCGTCTTATTTAGGACTCGTCCGACGTGGGATTCCGATTGATTTAAACGAACCTCCACCGTTGTGGCTATGA 522 0.5287 MDSSSSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAAGLCLDLNAPSSDHRWPPVPSRSFVVTEFLQTGVLKDFNTPQPPPVAAVAGLRRHDGAFSVSGGVQVAEHTSTASYLGLVRRGIPIDLNEPPPLWL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00340 173 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Car01g00340 173 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 163 - -
Car01g00340 173 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Car01g00340 173 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Car01g00340 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00340 Car-Chr1 2650023 2650932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00340 6 173 AP2-EREBP Transcription Factor Family AT1G28360 49.254 2.86e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g00340 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00340 - - cam:101504196 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00340 01 2650023 2650932 Car01g00340 01 2650023 2650932 ECH