Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00338 ATGTCTATTTCAGATTCTCCCGTAGCAGATGATCCTTCGCTTCaagacgacgaagatgacgacgaagaggaagaagaggaagaggaggaagaaattgaagaagaagtagaagaggaagaagagcatgaagaggaacaggaagaagaagaagaaattgaagaacaacaacaacaacaagaggaagaggaggaggaggaagtagaagaagttgaagaagaagaagaggaggaggaagaagaagaagaagaagaagaagaagaggaggtggaagaagaagaagaagaggtggtggaagaagaagaagaagaggtggtggaagaagaagaagaagaggaggaggaggaggaggagaaagaagaagaggtggaagaagttgaagaggaagaggaggaagaagttgatgaggagaagggagaagaagttgaagaggaggaagtagaaacaatagaggtagaagaggaggaggaggaagaagaagttgaagaggaggaagtagaaacagtagaggtagaagaggaggaggaggaagaagaagttgaagaggaggaagcagaaacagtagaggtagaagaggaagaggaggaggaggaggaggaagaacaagaagaagaaactataggGATGgaaaaagaggaaaaagaagaaatagcaatggaagaggaggaagaaaaagaagaggaagcaataaaggttaaagaggaggaagaacaagaagaagcggaagctataaagattaaaaaggaggaagaacaagaagcagtagtagaggagaaagaGGTGGTTCCAGATTCTCTTCTCGATGCGGATATACTCAACAAAGACTTAAGCCAACATATGGAGTTTAAGGTGAAAGAAGAAAACATGGGGCCAGTTTCTTCTGTGGCAGAAAACCCTGTAGTAATGAAGTCATCACATTATATGGAAGAGAATGATGCCGTGTTTAAAGCATCTGTTCCATCGCATGAGGCAATAACATTAAAAAAGGAGGAGTTCCACCTGAAACAAGAAATTTCTAGTCCTCCAAAATCAAGTGCAAACTTGATTTCTGCTGAAGATGGCAAAAATCAAGGATTAAATGTTGACCTTGATAACGCTAGATCTCCTGTTCAGAGAAAAACCTTTGGAGGAGGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCCGATGTTAAGGACATTGATTCTAGGGCCACCAAGTCATCCAGTGATATGGGAAAAGATGTGGTTACTGGAGTCATACAAAGAGATAATTTTGTTGAGGATGCTGATGGTGGTCCGAACTCCAAGAAGAAAATTATGCAGTCAGAGATTGAGTCAATTGTTGATGTGAAACAAACAACATCAAGGAGGACAAGAGATCTGTCTCCCAGTGCTGATATTAAAGATGGAAACAAAAGACCGGCAATTTTATGTGATTTTTTCGCTAAAGGTTGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGTGAATAATAGTGACCAGGAGGCTGAAGGAGACTCATTTACTGCACTTCAAAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAGACTTGACGGGTTGAGAACGAATGAGGAAGAAGCAAGTCCAAGTTGGCACCCATCTCATGAAAAAGAGAAGTTTCTGATGAGGGACAGCTTGTTTCCAGAGAGTAGATCTGCATTTAATGCATCAAACAATTATTTCACCTCAAATCATTCCTCATATTCATCCCGTGCAGAGGGAATGACTGCTAATCGAAATCAACATATGTACAGAGGATTCTCAAATGCTTTGTGTTCTCAAAAGCTTTTGAACAGTGAGAAGGAGTATCACGCCCTTAAGTCCACTTTCTCTTCAGAGCGGGAAGATTTGCCTCTAGTTGGTTCATCTAGGGTTCCGCCACACTCTAATGGATATAAATTAAAAACTTGTTCTAATAATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATTACTTCCATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGGCGAGGACATGTGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGACAAAAGTTCTGTATCTTCCCATAATAAATTTTATGAAAATGAACCTAACAGAAGTTCTGTTCCTCGTGGAAAAGATTGTCTCTCAACTAAAACAGAGATAACATCAGGAACTTGTTCAAACTACCAAAATGGTTATGTAGATGTGGGACAACATACCTTTAGTGTTGAAGATACGATGGAAACAGAGAAAAAACGAACTGAGCATGATGCTAGGCATCACGGTGAAGGATCGGGGCACAAAAAGAGGAGAGTATCAAAGGATAATAAAATTTATGAAATGGATGTTGACTTTCAAACAGATGGCAGTGTGCAAAAAGAAACAAAGGCAGTTAAAATTTTCCGGGCAGCTCTTGTTGATCTAGTGAAGGAGTTGTTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATAGTAATTGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGGCACACCAGATTCCGACCACCGAAGATACCGCTAAGCAATATGTTTCTTCATGTCGGTCGAAAATTGCGAAGTTAGTCAATGGATATGTCAGTAAATATGGGAAATCTTGA 2754 0.2912 MSISDSPVADDPSLQDDEDDDEEEEEEEEEEIEEEVEEEEEHEEEQEEEEEIEEQQQQQEEEEEEEVEEVEEEEEEEEEEEEEEEEEEVEEEEEEVVEEEEEEVVEEEEEEEEEEEEKEEEVEEVEEEEEEEVDEEKGEEVEEEEVETIEVEEEEEEEEVEEEEVETVEVEEEEEEEEVEEEEAETVEVEEEEEEEEEEEQEEETIGMEKEEKEEIAMEEEEEKEEEAIKVKEEEEQEEAEAIKIKKEEEQEAVVEEKEVVPDSLLDADILNKDLSQHMEFKVKEENMGPVSSVAENPVVMKSSHYMEENDAVFKASVPSHEAITLKKEEFHLKQEISSPPKSSANLISAEDGKNQGLNVDLDNARSPVQRKTFGGGSEPDCNSKASLSDVKDIDSRATKSSSDMGKDVVTGVIQRDNFVEDADGGPNSKKKIMQSEIESIVDVKQTTSRRTRDLSPSADIKDGNKRPAILCDFFAKGWCIRGSSCSFLHIKDSVNNSDQEAEGDSFTALQKRELKLEKGVKERLDGLRTNEEEASPSWHPSHEKEKFLMRDSLFPESRSAFNASNNYFTSNHSSYSSRAEGMTANRNQHMYRGFSNALCSQKLLNSEKEYHALKSTFSSEREDLPLVGSSRVPPHSNGYKLKTCSNNWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQARTCDDSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSSVPRGKDCLSTKTEITSGTCSNYQNGYVDVGQHTFSVEDTMETEKKRTEHDARHHGEGSGHKKRRVSKDNKIYEMDVDFQTDGSVQKETKAVKIFRAALVDLVKELLKPFWHEGRLSKDAHIVIVKKSVDKVVSTLEAHQIPTTEDTAKQYVSSCRSKIAKLVNGYVSKYGKS 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00338 917 MobiDBLite consensus disorder prediction 1 259 - -
Car01g00338 917 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 119 917 - -
Car01g00338 917 MobiDBLite consensus disorder prediction 386 402 - -
Car01g00338 917 ProSiteProfiles Zinc finger C3H1-type profile. 466 493 IPR000571 GO:0046872
Car01g00338 917 MobiDBLite consensus disorder prediction 337 353 - -
Car01g00338 917 SUPERFAMILY CCCH zinc finger 466 490 IPR036855 GO:0046872
Car01g00338 917 MobiDBLite consensus disorder prediction 334 405 - -
Car01g00338 917 MobiDBLite consensus disorder prediction 11 234 - -
Car01g00338 917 MobiDBLite consensus disorder prediction 235 259 - -
Car01g00338 917 MobiDBLite consensus disorder prediction 718 750 - -
Car01g00338 917 SMART c3hfinal6 466 492 IPR000571 GO:0046872
Car01g00338 917 MobiDBLite consensus disorder prediction 718 733 - -
Car01g00338 917 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 471 490 IPR000571 GO:0046872
Car01g00338 917 Coils Coil 14 253 - -
Car01g00338 917 MobiDBLite consensus disorder prediction 785 811 - -
Car01g00338 917 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 119 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00338 Car-Chr1 2625212 2632999 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g00338 zf-CCCH 4.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00338 - - cam:101503101 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00338 01 2625212 2632999 Car01g00338 01 2625212 2632999 ECH