Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00334 ATGGATGAAAGGTGGGGTGAGGAAAAGAAAATCTATGACTACAAAGAAGAGAATATTGAGTatgaagaagaagaagaagatgatgaagatgaagaagaGGTTTTGAAAGAGAAGAAAAGGGTGATGAAGAGTTATAAAAAGAAAGGGTCAAAAGCTGGAGGATCAGTGTTACCATGTTGTCAAGTTGATAACTGTAATGCTGATCTAAGTGTTGCTAAGCAATATCATAAGCGCCATAAGGTTTGTGAACATCATGCTAAGGCTCATTCAGTTCTCATTCAAGACCTACAACAAAGGTTTTGCCAACAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGAGTTAAAAAGAAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAATGTATCTGAATATCACGGAGAAGGATTTAACCGATGA 438 0.3493 MDERWGEEKKIYDYKEENIEYEEEEEDDEDEEEVLKEKKRVMKSYKKKGSKAGGSVLPCCQVDNCNADLSVAKQYHKRHKVCEHHAKAHSVLIQDLQQRFCQQCSRFHEVSEFDELKRSCRRRLAGHNERRRKNVSEYHGEGFNR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00334 145 Coils Coil 11 41 - -
Car01g00334 145 SUPERFAMILY SBT domain 58 137 IPR036893 GO:0003677|GO:0005634
Car01g00334 145 PIRSF SBP 6 145 IPR017238 GO:0003677|GO:0003700|GO:0009908
Car01g00334 145 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Car01g00334 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 21 135 - -
Car01g00334 145 Gene3D - 50 121 IPR036893 GO:0003677|GO:0005634
Car01g00334 145 Pfam SBP domain 60 133 IPR004333 GO:0003677
Car01g00334 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 135 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00334 Car-Chr1 2602840 2605215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00334 48 145 SBP-box Gene Family AT1G53160 65.657 1.30e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car01g00334 SBP 9.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00334 - - gmx:100782285 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00334 01 2602840 2605215 Car01g00334 01 2602840 2605215 ECH
Car01g00334 01 2602840 2605215 Car06g01598 06 15786854 15788817 ECH
Car01g02027 01 45538889 45541388 Car01g00334 01 2602840 2605215 ECH
Car06g01598 06 15786854 15788817 Car01g00334 01 2602840 2605215 ECH