Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00333 ATGTTTAGTAACTGTGAGAAAATGGTTGCCATCTCTTCAACTACTAACCAATGGCCACAGAATGAGATAGATGATGGTAATAATAAGGTAATGGAAAAACAACAAGGTGAAGAACAGATTCTGATACAACAGCAAGGTGCACTAAAGTGTCCTCGTTGTGACTCATCAAACACAAAATTCTGTTACTACAACAACTACAGTTTGTCACAACCAAGACATTTCTGCAAAGCCTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTCGGTGGTGGTTACAGAAGAAACAAACGtactactactactaatactactCTCATCAAAAAACCAACAACGTTAATTGATGCTACTTCTATTAGTCCTATGTTTTATGGTTTATCTAGTAGTAATAATAATAATCCTAGGCCTTGTGATGTGAATCTTATACCATTATCAAGGTTCAATCTTTCTAGAGTTTCAAATTCAGGGTATGATGGATTTTCAACAGGGTTTATGTCTAGTGAAACCAATGGTTATAATACAAGTGGGTTTAATTCAGTTATGCCTTCTGTGTTGAGTTCTACTACTCTGCAGCTACAACATAAATTCATGAATGATGGTTTGAAATATGGTAGCAACAATTTTCAGGTGGGTTTAGATGAAGAGAAGAAAGTTGAAGGACAGAACAGTAAATTTGAGTGGAATAATGGTGTTTGTCAAAACCAGATTGAACATGTGGGTTTGTATGATGATTCTATTTCTAATTCTTCACTTTATTGGAATATAGGATCATCATCAGGTATTGGTGTTTGGAATGATCAAGGTGCTAATATTGCTTCATCACTCACTTCTCTGATCTAG 852 0.3486 MFSNCEKMVAISSTTNQWPQNEIDDGNNKVMEKQQGEEQILIQQQGALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNKRTTTTNTTLIKKPTTLIDATSISPMFYGLSSSNNNNPRPCDVNLIPLSRFNLSRVSNSGYDGFSTGFMSSETNGYNTSGFNSVMPSVLSSTTLQLQHKFMNDGLKYGSNNFQVGLDEEKKVEGQNSKFEWNNGVCQNQIEHVGLYDDSISNSSLYWNIGSSSGIGVWNDQGANIASSLTSLI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00333 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 107 IPR045174 GO:0003700|GO:0006355
Car01g00333 283 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Car01g00333 283 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677|GO:0006355
Car01g00333 283 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Car01g00333 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00333 Car-Chr1 2571269 2572652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00333 1 151 C2C2-Dof Transcription Factor Family AT1G28310 51.149 1.20e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car01g00333 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00333 - - cam:101501208 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00333 01 2571269 2572652 Car01g00333 01 2571269 2572652 ECH