Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00330 | ATGAAGTTCAACGTTGCAAATCCAACCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGATCTGAAACTCCGTGCATTTTGGGACAAGAGGATCTCGCAAGAGGTTAATGGCGATGCTTTGGGCGAGGAATTCAAAGGTTATGTCTTCAAAATCACCGGAGGATGTGACAAACAAGGTTTTCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTCGCCTCTTGCTCCACCGAGGAACTCCTTGTTTCCGAGGATATGGAAGGCGTAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTTAGTCCAGACCTCTCTGTCTTGAACTTGGTTATTGTGAAGAAGGGTGAAAATGATTTGCCAGGCTTGACAGATGTTGAAAAGCCAAGAATGAGGGGTCCTAAGAGAGCTTCCAAAATCCGCAAGCTCTTCAATCTGTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACCTACCGTAGGACATTCACAACCAAAGCTGGGAAAAAGGTGAGCAAAGCTCCAAAGATACAGCGACTGGTCACTCCTCTTACTCTTCAGAGAAAGAGGGCAAGAATTGCAGATAAGAAGAAAAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAAAAACTTCTCGCCTCCAGGTTGAAGGAGCAAAGGGAACGCCGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTTTCCAGTGCTAAGCCAGCTGTCACAGCATAG | 747 | 0.4659 | MKFNVANPTTGCQKKLEIDDDLKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSSAKPAVTA | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00330 | 248 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Car01g00330 | 248 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 248 | - | - | |
| Car01g00330 | 248 | Coils | Coil | 189 | 216 | - | - | |
| Car01g00330 | 248 | MobiDBLite | consensus disorder prediction | 219 | 237 | - | - | |
| Car01g00330 | 248 | PIRSF | RPS6e | 1 | 248 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Car01g00330 | 248 | Gene3D | - | 133 | 234 | - | - | |
| Car01g00330 | 248 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Car01g00330 | 248 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 248 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Car01g00330 | 248 | MobiDBLite | consensus disorder prediction | 219 | 248 | - | - | |
| Car01g00330 | 248 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g00330 | Car-Chr1 | 2537355 | 2539916 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g00330 | 1 | 242 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 73.967 | 1.14e-119 | 337 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car06g01595 | 06 | 15733155 | 15735623 | Car01g00330 | 01 | 2537355 | 2539916 | PCT |