Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00328 ATGGACTCAAACAATAACGACCCCCATGATCCAGACGCTGATGCAATgtttcgattatatttGCATGATTATTTGATCAAAAAGGGAATGCATAATACCGCTGAGATTTTCATGAATGAAGCCGAGGTTCATAAAATCCCCACAGACAAGAACTTTTTGGATACGGTGCTTGATTCTCCAGATGGATTCCTCCATGACTGGTGGTCTATTTTCTATGATGTATTTAGGTCTAGACAAGGAAGGCATCAGCAGTCTCAGCCAGAGTTCTCTAGTAAGGTGGTCCCAAAAATGATCCATGCTGCAAGGAATAGTTCCCCTTTTAGAATCCCTCAAATGCCAATGAATGAGCAGAGATCTCAACAATTTCAAGCCAACCCCAGCTTTAACAACATAATGGCACAACCAACTGGTTGTTTGATATCTCCGAGACTGTACAATAAAGAGCAACTTGGAAATATTGATCCACGTTTGCTTGCTCTTATCGGAGCAAATAACCCGAATTTCATGGCAGGGACTAGTTCAAATAATCCATCGCAAGATATGGGCAAGCAGGTCCAGAAGCAAGCCTTTAAGGAAAATGGAATTGGTATGCGTGTGGGATTTACTTCCAGAGGACCTCAAAAAGCAATGCTGCCTTTAGAAAGACCTCATGAAACAAATAACTATGACGCTCCTAATGTGGTGCCAACAAATGGTTTGCCATTAAATGACCCACGACTAACTTCACTTTTGCAAATACCAAACTATCCACAGCAGTGTCAAGTGTTGAACACACAAAATCAGGACGCAATCCTTACTCAAGCACTTGCAAGTGCTCCTAACAATCAGCCTTTCACAGCTCCTGGAAACTCTAGCAAATGTAACAGTCAATATCCAGAGATTCCCAAGACTGAATCAAGTAATAAGGATAAGGAGATGATGGGCCAAACAGTTAGAGCTGGAGAACCTCAATGCAAGCAGGATCAGCAAATGCAGTCCCAAAATATTGATAAGGGCAGAAAGAGAAAGGTAAGAGCATCCTTAAGACCTGAAGAATGTGTCCGGGACTGTGTGGATGCGGCAGATGGAAAACCAGCGGATGAAAATGTGGAGTCCTACCTTTCTATTGAAAATGGGAATGCTGATCATAGAACGTTGCCGTTCAGCAATCTGAAACGTATTTCAGCAACAAACAGCAGAAATGAAAATAAAGGTTTTTCATTCCAAGAGGTTGGAACCCTTCACTCATGCAAAAGCAAGGTTTTATCCAGCCATTTTTCATCAAATGGAGAAGTTTTGGCAAGTGCTGGACATGACAAGAAGATTTTTATTTGGAACATGGAAACTTTTGAATGTGTTTCTACTGAAGAAACACATTCACTCCTCATTACAGATGTCCGGTTTAGACCAGGGTCAACTATATTTGCAACATCTTCCTTTGATAGATCTGTAAGACTATGGGATACTACTAGACCAGCCAAATCATTGTTAAAGCTTACTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGTGGATCTTCTTTGCTCGTGTGATAGCAATGATATAATTCGTGTGTGGAATGTGAACCAATGTGCTTGCTTGCATGTAATTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTATGGGAAGCTTCTAGCTACTGCTACTGGAAATAATGTCAAAATATTTGATATTGAGACTAATAGCCTTCTGTACCATCTACAGGGACATGATAAAGATGTTCTTTCTATTTGTTGGGATAGAAGTGGAAAGTATATTGCCTCTGTCAGTGAAGATAGCGCACGGGTTTGGTCGGACGGAGAATGCATTAGTGAGTTGCCTTCAAATGGGAACAAGTTTCAATCATGCATATTTCATCCGGCATATTGTAATCTCTTAGTCATTGGTGGCTATCAGTCCCTTGAATTCTGGAGTCCAACTGAGAGCAGTAGAACATTGTCAATCATTGCACATAGGGGGTTAATTGCTGGACTAGCAGATTCACCCGAAGATGAATTAATTGCCTCGGCTAGCCATGATCACGTGGTGAAACTGTGGAAATGA 2064 0.4109 MDSNNNDPHDPDADAMFRLYLHDYLIKKGMHNTAEIFMNEAEVHKIPTDKNFLDTVLDSPDGFLHDWWSIFYDVFRSRQGRHQQSQPEFSSKVVPKMIHAARNSSPFRIPQMPMNEQRSQQFQANPSFNNIMAQPTGCLISPRLYNKEQLGNIDPRLLALIGANNPNFMAGTSSNNPSQDMGKQVQKQAFKENGIGMRVGFTSRGPQKAMLPLERPHETNNYDAPNVVPTNGLPLNDPRLTSLLQIPNYPQQCQVLNTQNQDAILTQALASAPNNQPFTAPGNSSKCNSQYPEIPKTESSNKDKEMMGQTVRAGEPQCKQDQQMQSQNIDKGRKRKVRASLRPEECVRDCVDAADGKPADENVESYLSIENGNADHRTLPFSNLKRISATNSRNENKGFSFQEVGTLHSCKSKVLSSHFSSNGEVLASAGHDKKIFIWNMETFECVSTEETHSLLITDVRFRPGSTIFATSSFDRSVRLWDTTRPAKSLLKLTGHSEQVMSLDFHPRKVDLLCSCDSNDIIRVWNVNQCACLHVIKGGSKQVRFQPLYGKLLATATGNNVKIFDIETNSLLYHLQGHDKDVLSICWDRSGKYIASVSEDSARVWSDGECISELPSNGNKFQSCIFHPAYCNLLVIGGYQSLEFWSPTESSRTLSIIAHRGLIAGLADSPEDELIASASHDHVVKLWK 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00328 687 MobiDBLite consensus disorder prediction 279 296 - -
Car01g00328 687 SMART WD40_4 485 525 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 606 645 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 567 605 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 646 687 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 400 439 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 442 481 IPR001680 GO:0005515
Car01g00328 687 SMART WD40_4 528 564 IPR001680 GO:0005515
Car01g00328 687 Gene3D - 317 543 IPR015943 GO:0005515
Car01g00328 687 SUPERFAMILY WD40 repeat-like 400 687 IPR036322 GO:0005515
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 442 - -
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 687 IPR001680 GO:0005515
Car01g00328 687 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 687 IPR044716 GO:0003714
Car01g00328 687 Pfam LisH 22 41 IPR006594 GO:0005515
Car01g00328 687 Pfam WD domain, G-beta repeat 570 605 IPR001680 GO:0005515
Car01g00328 687 Pfam WD domain, G-beta repeat 489 525 IPR001680 GO:0005515
Car01g00328 687 Pfam WD domain, G-beta repeat 655 687 IPR001680 GO:0005515
Car01g00328 687 Pfam WD domain, G-beta repeat 408 439 IPR001680 GO:0005515
Car01g00328 687 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 481 IPR001680 GO:0005515
Car01g00328 687 MobiDBLite consensus disorder prediction 279 340 - -
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 481 - -
Car01g00328 687 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Car01g00328 687 PRINTS G protein beta WD-40 repeat signature 426 440 IPR020472 -
Car01g00328 687 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Car01g00328 687 PRINTS G protein beta WD-40 repeat signature 674 687 IPR020472 -
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 527 - -
Car01g00328 687 CDD WD40 411 687 - -
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 448 IPR001680 GO:0005515
Car01g00328 687 ProSitePatterns Trp-Asp (WD) repeats signature. 426 440 IPR019775 -
Car01g00328 687 Gene3D - 544 687 IPR015943 GO:0005515
Car01g00328 687 ProSiteProfiles LIS1 homology (LisH) motif profile. 20 45 IPR006594 GO:0005515
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 534 IPR001680 GO:0005515
Car01g00328 687 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00328 Car-Chr1 2521906 2528139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00328 394 686 Miscellaneous Gene Families AT5G08390 23.856 6.65e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Car01g00328 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00328 - - gsj:114387334 893.649