Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00315 ATGGCATTTCAGCATTGTTTCTCCCAAGAATTGTCAAATACCATGTCAGAAGCAGAAAATTCCAATGGCTGTTTTGATTGCAACATCTGCTTAGACTTTGCACACGATCCGATAGTAACCCTTTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAATGGCTCCATGTACAAAGTGATGATTCTCTTGGAGCTGATGAACATCCACAATGCCCTGTATGCAAAGATGTTATATCACATACCACAATGATCCCGTTGTACGGCCGTGGCGGCCAGGCTCCACCTAGTGGGAAGTCATCATGTTGTGATGATACTTTTGTACCACCAAGACCAACTGCTTCAGCTGCTCAAGCTCTTTTGGCAACAGCATCTCAAAGTGATCAGCAGCAGCGGCTTCCATATCGTAATCCTTATCAAGGACAACATTTAAACTCTTCTTTATACCAAGAAGAGGATGCTGTCACTTCACAAATGCACAGTCTTGGATCTCACCACCACAACCACCCTATGGTTGAGATGTTTGGGGAGATGGTTTTTGCCGGAGTGTTCGGCAACTCGCCGAACTCTTACCAGATGGTGGGAAATAACAGCTCTAGATTGAGAAGGCAAGAGTTGCAGACAGATAAATTTTTGAACAGGATTTCAAATTTTTTGTTTTGCTGCTTTATTCTGTGTCTTCTTGTCTTCTGA 690 0.4377 MAFQHCFSQELSNTMSEAENSNGCFDCNICLDFAHDPIVTLCGHLYCWPCIYKWLHVQSDDSLGADEHPQCPVCKDVISHTTMIPLYGRGGQAPPSGKSSCCDDTFVPPRPTASAAQALLATASQSDQQQRLPYRNPYQGQHLNSSLYQEEDAVTSQMHSLGSHHHNHPMVEMFGEMVFAGVFGNSPNSYQMVGNNSSRLRRQELQTDKFLNRISNFLFCCFILCLLVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00315 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 88 IPR013083 -
Car01g00315 229 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Car01g00315 229 SUPERFAMILY RING/U-box 23 87 - -
Car01g00315 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 4 229 - -
Car01g00315 229 Pfam Zinc finger, C3HC4 type (RING finger) 27 74 IPR018957 GO:0046872
Car01g00315 229 ProSiteProfiles Zinc finger RING-type profile. 27 75 IPR001841 -
Car01g00315 229 SMART ring_2 27 74 IPR001841 -
Car01g00315 229 CDD RING-HC_AtRMA_like 25 75 - -
Car01g00315 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00315 Car-Chr1 2377766 2379915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00315 20 215 C3H Transcription Factor Family AT4G27470 42.788 1.50e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00315 K10666 - gmx:100816864 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01572 06 15454628 15457629 Car01g00315 01 2377766 2379915 PCT