Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00300 ATGAGGTGTGGCTGCTTTGGAACATTATCTGTAAAGAAGGAAAAACGACCTTCTAATTATATTTCTAGTGAGATTGAAGGTTATCCTTTAGATAATATTAGGCATTTTTCTGATAAAGAGCTGAGATTGGCAACTGATAATTTTCATTTAAGCAATAAGATAGGAAGGGGAGGTTTTGGAACTGTTTATCAGGGAACATTAAAAGATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAAGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTATCAAATGTTAAACATTCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGACCTAACCGTACATTAGTTTATGAGTATGTGGAGAATGGCAACCTTCATACTGCATTACTTGGCAAAAAGAGTTCAAACATCAAACTAGAGTGGAGAAAAAGATCTGCTATTTGCATCGGTACGGCTAAAGGTCTTGCATATCTTCATGAAGAACTTACACAACATATTGTACACAGAGATATCAAAGCTAGTAATGTACTACTTGACAAAGATTTTAATCCCAAAATTGGTGATTTTGGAATGGCCAAATTATTTCCAGATGATATCACTCATATCAGCACAAGAATTGCCGGTACAACTGGTTACTTGGCACCAGAATATGCATTAGGTGGCCAATTAACTAAGAAGGCTGATATATATAGTTTTGGAGTACTTATACTTGAAATAATTAGTGGCAAAAGCAGCTCAAGGACAAACTGGGAAGGGTCACATAAATTCCTCTTGGAATGGGCATGGCAACTTCATGAAGATGAGAAATGGTTGGAGCTAGTAGATCCAAATATGGAAGAATATCATGAGAAAGAAGTAATCAAGTACATTAAAGTTGCTCTTTTCTGCACGCAATCAACAGCAAGAAGAAGGCCATTGATGAGTCAAGTGGTCGATATGCTCACTAAAGATATTCAGCTCAATGAGAAACAACTCACAGCACCAGGATTGTTCAATTATGATGTAGGAGAATCCTCTCAAAAGAAATCAAACTCTGAATCTTTAATTTGTCACACTAGTTCTACTCAGGCTAGTATTACTCAGGTGATAGCAAGGTGA 1110 0.364 MRCGCFGTLSVKKEKRPSNYISSEIEGYPLDNIRHFSDKELRLATDNFHLSNKIGRGGFGTVYQGTLKDGRKIAVKPLSVGSKQGVREFLTEIKTLSNVKHSNLVELVGFCIQGPNRTLVYEYVENGNLHTALLGKKSSNIKLEWRKRSAICIGTAKGLAYLHEELTQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGKSSSRTNWEGSHKFLLEWAWQLHEDEKWLELVDPNMEEYHEKEVIKYIKVALFCTQSTARRRPLMSQVVDMLTKDIQLNEKQLTAPGLFNYDVGESSQKKSNSESLICHTSSTQASITQVIAR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00300 369 CDD STKc_IRAK 54 320 - -
Car01g00300 369 PANTHER - 1 361 - -
Car01g00300 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Car01g00300 369 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00300 369 Gene3D Phosphorylase Kinase; domain 1 20 123 - -
Car01g00300 369 Gene3D Transferase(Phosphotransferase) domain 1 124 333 - -
Car01g00300 369 PIRSF TyrPK_CSF1-R 36 153 - -
Car01g00300 369 PIRSF TyrPK_CSF1-R 151 252 - -
Car01g00300 369 PIRSF TyrPK_CSF1-R 281 367 - -
Car01g00300 369 Pfam Protein tyrosine and serine/threonine kinase 49 318 IPR001245 GO:0004672|GO:0006468
Car01g00300 369 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Car01g00300 369 SUPERFAMILY Protein kinase-like (PK-like) 22 318 IPR011009 -
Car01g00300 369 SMART serkin_6 48 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00300 369 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00300 Car-Chr1 2308883 2312119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00300 9 333 Receptor kinase-like Gene Family AT1G56120 50.456 1.72e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g00300 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00300 - - mtr:MTR_2g013210 670.618