Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00297 ATGTCTGACATCGAAAATCACGGTGCTTCTTCCCCCGAAAAGCCAAGTTCCCGTGGAGCTGGTCATGAGAGCACGCGGATGAGAAGGAGAGATGGAGAAAGGAAAACTTTTCATGACCGCCGTCACAGAGACGATAAGTATGAAGGTTTTAAAGGAAGAGGCAGATATGACAGTTATAATCGTCACCGTGGCCGTGATTATGATAGGCATAATGACTATGTTCGTGACGAAGATACAAGGCAGAGATACGGTGCACGGTCAAAGAGATCCAGGAGGGAatctagatctagatctagatcacgatccaaatcCCCTCCTCAACCTGAAGGCAAAAGGACCTCTGGTTTTGATATGGCACCACCTGCTACGGGCGTAACACCCGCTGTTTCAGGACAAATGCCGGGGATTGCTCATATGATTCAAGGGGCTACACAAAATTTGTCACCATTTGGAATTTCACAGGCTACAAGGCACGCTCGGCGAGTGTACGTTGGTGGGCTTCCTCCTTTTACTAACGAGCAGTCAATTGCATCATTCTTTAGCCAAGTGATGGTTGCTATTGGGGGAAATTCTGCTGGATCAGgtgattctgttgtcaatgtctacatcaatcacgagaagaaatttgcatttgtggagatgagaaccgttgaagaagctagcaatgcaatggctttagatggaatagtatttgagGGTGTTGCTGTGAGGGTTCGTAGACCAACTGACTATAATCCTTCGTTAGCTGCAGCTCTTGGTCCTTGCCAGCCAAGTCCAAACCTTAACTTATCTGCTGTTGGACTTTCTGCAGGTTCAATTGGTGGAGCTGAGGGACTTGATCGCATCTTTGTGGGAGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAGTTGCTCCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGAGACTGGAAATTCTAAAGGATATGGTTTTTGCATCTATCAGGATCCAGCAGTAACAGACATCGCTTGCGCTTCTCTCAATGGCCTTAAAATGGGCGATAAAACATTAACCGTAAGGCGTGCTACTGTCAGTGCACATTCTAAAACAGAAGAGGAACACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAACAGCTTTTGAAGTGAGTGGGATAAATATTTCAGAAGTCGAAAGAATGCCAACAAACGATGAAAGCCCCACTAAAGTTTTATGTCTATCTGAGGCCGTTACTACTGATCAATTAATGGATAATGGAGAATATGAAGAAATATTGGAAGATATGCGGGATGAATGCTGCAAGTTTGGTACCTTAATAAATGTTGTTATTCCTCGCCCAAATCAAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTGTTCTTGGAATATTCTGACTGTGCCGGTTGTTTAGCTGCAAAAAATGCTCTAAATGGTAGGAAATTTGGGGGGAATATTGTGACTGCTGTATATTATCCAGAAGAAAAATATCATAGTATGGATTATGATCTATAA 1524 0.397 MSDIENHGASSPEKPSSRGAGHESTRMRRRDGERKTFHDRRHRDDKYEGFKGRGRYDSYNRHRGRDYDRHNDYVRDEDTRQRYGARSKRSRRESRSRSRSRSKSPPQPEGKRTSGFDMAPPATGVTPAVSGQMPGIAHMIQGATQNLSPFGISQATRHARRVYVGGLPPFTNEQSIASFFSQVMVAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAALGPCQPSPNLNLSAVGLSAGSIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSAHSKTEEEHIFARAQQHIAMQKTAFEVSGINISEVERMPTNDESPTKVLCLSEAVTTDQLMDNGEYEEILEDMRDECCKFGTLINVVIPRPNQNGELSTGIGKVFLEYSDCAGCLAAKNALNGRKFGGNIVTAVYYPEEKYHSMDYDL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00297 507 SUPERFAMILY RNA-binding domain, RBD 72 240 IPR035979 GO:0003676
Car01g00297 507 SMART rrm1_1 281 354 IPR000504 GO:0003723
Car01g00297 507 SMART rrm1_1 407 493 IPR000504 GO:0003723
Car01g00297 507 SMART rrm1_1 161 239 IPR000504 GO:0003723
Car01g00297 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 243 IPR000504 GO:0003723
Car01g00297 507 CDD RRM2_U2AF65 280 356 - -
Car01g00297 507 SUPERFAMILY RNA-binding domain, RBD 281 498 IPR035979 GO:0003676
Car01g00297 507 MobiDBLite consensus disorder prediction 19 84 - -
Car01g00297 507 Gene3D - 155 253 IPR012677 -
Car01g00297 507 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 13 505 IPR006529 GO:0003723|GO:0005634|GO:0006397
Car01g00297 507 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 6 506 - -
Car01g00297 507 Gene3D - 274 376 IPR012677 -
Car01g00297 507 CDD RRM1_U2AF65 159 241 - -
Car01g00297 507 PANTHER RNA-BINDING PROTEIN 6 506 - -
Car01g00297 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Car01g00297 507 CDD RRM3_U2AF65 405 493 - -
Car01g00297 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 351 IPR000504 GO:0003723
Car01g00297 507 Gene3D - 401 506 IPR012677 -
Car01g00297 507 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00297 Car-Chr1 2272622 2280923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00297 274 486 Eukaryotic Initiation Factors Gene Family AT1G71770 22.066 5.20e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00297 K12837 - vvi:100243034 638.647