Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00286 ATGGCGGATGATGGATTTGAATTTCCGACACTGTTTGGGGACGATGGAGATGAATCCGATGACGAAAAGCTTGCAATGGATATCGAATCCTTTCTTAGCGTTCTTGATGAAGACTGTGTTCCTTCCGAGAGTAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGGTCCATGATAATTTTTTACTTCAAAATGGGAATACCATGCCTGACTCCGAACTTGAAAACCAGGGACCTTCATCACAGACGTGTTCTTCCCCATATGCTTTTGCTGGTGGTTACAGGGACACGTTCTCTGTTGTTGAAAGTGATGAGATTTATTATGTAGAAAGGGATGGAGTTTCTGAACGCGAGATGCCTTCTTACAGTGTGGACACAAGTTTGGCCGAGGCAAATTCAAACTACCCAACTGTTTGTGGAGATAGTTTGAACTCAAGTATGTGGAAGggtgaaaatgatagccaaatcaaacatattggagatgatgtagaatctgaacATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGAAGATTTTGGAACAGCTTTGAAAGACATTATTGGAGTTTCTAGGCAGCAGGAAAATGACTCGTGTACATCTTTTGAAATGCCGTTTGTGGATGTTGACAGACCTACACATTTTGGAACTTCAACCAATTCTACTATTTGTCAAGGTTCCGACGTTCCTACTGATTTTTATGGATACTATCCATCTTTGAATAGTTACCAGGGTATAAATGTTAGACCTGTTGTTTTCGACAGTTCTGGTTATTTGCCTAGTGGTGCTTGTCCCCAATTCTGGAAAAATGAAGAGATGGTAAATAGTAATATGAAGGTTGAAAGAATGGATTCTGGTTATTTGCCTAATGGTGCTTGTCCTCAATTCTGGAAAAATGAAGAGATGGTAAGTAATATGAAGGCTGAAAGAATGGATTTCTTAACCGATACTACAAATATGATCAGTGGCATGCATTTGAGGACTATTGGTCGGATGCCTTTTCAGGATAGTCAATTTATGCCAGCAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTCTATTTGAAGACAGTGAATCAGCAAAACTATCATGTGCTCCATATATTTCTAGTGAAGACCAGTCGCATATTGTCAAAGCTGAAAGAGATGAAATGATTATGCCTTATCAAAATTCTTTTCATAATGAGGATACCAAGTTAAATGCAGGTCAAGAGGTGAAACAATTAAATGGTATGTTCCCTACTATTGGATGTCAGAATGATTTTTTCAAGAGTGAGGATAGTGATACAATTGTAACAACTGAGAATGCCAATTACTATCAAGCTCTTATTGATGAAACTGCTAATAAATTTCCCAGAAACATTGGAAGTTTGAATTCAAAATCCTTAGATAAATCTCGATCTATTGCCCAGGCATCAATCAACGGGAAACACTATAATTGTGTTGTAAGTGAGCTAGAGGATAAACCAACTGAATATAAAAGTATTGATTCTCAACTTTCAAAAAGAAGTACTGAGGGATCAAATGTCGAGGATGACTTTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTTGGTCTTCTGAACCAGATAATTCCCTTAATATGTCACAATCTTCTAGATTTGATTATACCCAACCTTATATGGTGGGAGGCACAAGACCAAAGCCACGCGACGAGCAATACGTATTACGAGCTGCATTGCAGGATCTATCACAGCCAAAGGCAGAAGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTGTTACGTCATCAGAGAATCGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGTTGTGGAGGAATTCTTGCAGATGACCAGGGTCTTGGTAAAACAGTGTCAACTATTGCTTTAATACTAAAAGAAAGGCCTCCACTGCTGAAGACATGCAATAATGCACTAAAAAATGAATTAGAGACTTTGGATTTGGATGATGACCCACTTCCCGAGAATGGAGTAGTGAAGAAAGTTTCTAACATGTGCCAAGATATATCTAATAGGAATCCAATCACAAGTGTGAATTTGTTGGTGCATGCAAAGGGCAGGCCATCTGCGGGAACCCTTATTGTTTGTCCTACTAGTGTCCTAAGACAGTGGGCTGATGAGCTGCAGAATAAGGTAACTTGCAAAGCAAATCTCTCTGTGCTTGTTTACCACGGGAGCAGTCGAACCAAAGATCCTTATGAGCTTTCCAAGTATGACGTTGTGTTGACAACTTATTCTATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTCGACAAAGATGACCAAGAGAAAGGAGTTTATGAAGATCATGCTGTGCCGAGCAAAAAAAGGAAATGCCCTCCTAGTTCTAGTAAAAGTGGCAAGAAGGGTTTAGATAGCATGATGCGTGAGGCTGTTGCACGCTCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGCTGGGGTCTTCGAGCTAAACGCAGATGGTGCTTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTTAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACCATCAAGATTCCTATTAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACGATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCAATTATTTCTTTGCCACCTAAGTCTGTAGAGTTGAAAAAGGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGATCACCCTTTGCTTGTCAAGCGTTACAATTCTACTTCTCTGTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAGAAACAGTTATCTCTTTTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATGCTCCTGATGATGCCGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTCTGAACACCTTACTGGTGAGGACAACCAGTGCCCTGCAACAAACTGCAAAACTCGACTAAGCACGTCTTCAGTGTTTTCCAAAGCCACACTGAACAGTTCTCCATCTCATCAGGCATGTGATCATTTACCTGGTTACTCTGGTTCTGAGGTTGTGGAGGCTGAACCTTGTTCTCGGGCTCAGCCATGCGATTCCTCAAAAATAAAGGCTGCACTGGAGGTGTTGCTTTCATTGTCTAAGCCACAATGCCATATTTCCCAAAAAAGTTCTGTGCAGAGCACTTCTAGGGAAAGTACTGATTGCAGCTCCACTTCTGCTGATAATGGACAATCCTTTAATGATGTTTGCGAAAAGAAAAGTGTGTTTATGGAGAAAAGCTCTAACAGTTCAGTTGGTTCTGTTGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACCGGGATGCTAGATTTACTTGAAGCGTGTCTCAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTTATCGCAAGAGATAAAGCCGTTAAAGATTTTAACACACTCCCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGCCTTGGTCTGAACATGGTGGCAGCCTGCCACGTTCTCATGCTAGATCTATGGtggaatcctacaactgaagatcaagccatagacagagcgcatcgaattggacagaCTCGTCCTGTTACAGTTTTACGGTTAACAGTCAAAGATACGGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTTCATCTGCTTTTGGAGAGGATGGAACTGGTGGTCGTGAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4059 0.3999 MADDGFEFPTLFGDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESGVHDNFLLQNGNTMPDSELENQGPSSQTCSSPYAFAGGYRDTFSVVESDEIYYVERDGVSEREMPSYSVDTSLAEANSNYPTVCGDSLNSSMWKGENDSQIKHIGDDVESEHASHSSIIENVDGTFEDFGTALKDIIGVSRQQENDSCTSFEMPFVDVDRPTHFGTSTNSTICQGSDVPTDFYGYYPSLNSYQGINVRPVVFDSSGYLPSGACPQFWKNEEMVNSNMKVERMDSGYLPNGACPQFWKNEEMVSNMKAERMDFLTDTTNMISGMHLRTIGRMPFQDSQFMPADSEYPSFFPGNVLFEDSESAKLSCAPYISSEDQSHIVKAERDEMIMPYQNSFHNEDTKLNAGQEVKQLNGMFPTIGCQNDFFKSEDSDTIVTTENANYYQALIDETANKFPRNIGSLNSKSLDKSRSIAQASINGKHYNCVVSELEDKPTEYKSIDSQLSKRSTEGSNVEDDFDVCIIEDISHPAPTSWSSEPDNSLNMSQSSRFDYTQPYMVGGTRPKPRDEQYVLRAALQDLSQPKAEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCCGGILADDQGLGKTVSTIALILKERPPLLKTCNNALKNELETLDLDDDPLPENGVVKKVSNMCQDISNRNPITSVNLLVHAKGRPSAGTLIVCPTSVLRQWADELQNKVTCKANLSVLVYHGSSRTKDPYELSKYDVVLTTYSIVSMEVPKQPLVDKDDQEKGVYEDHAVPSKKRKCPPSSSKSGKKGLDSMMREAVARSLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTSLWKSSVEMAKKLPQEKQLSLLKCLEASLALCGICNDAPDDAVVSVCGHVFCNQCISEHLTGEDNQCPATNCKTRLSTSSVFSKATLNSSPSHQACDHLPGYSGSEVVEAEPCSRAQPCDSSKIKAALEVLLSLSKPQCHISQKSSVQSTSRESTDCSSTSADNGQSFNDVCEKKSVFMEKSSNSSVGSVGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVSSAFGEDGTGGRESRLTVDDLKYLFMM 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00286 1352 Gene3D - 573 664 IPR038718 -
Car01g00286 1352 MobiDBLite consensus disorder prediction 62 89 - -
Car01g00286 1352 Gene3D - 807 935 IPR038718 -
Car01g00286 1352 ProSitePatterns Zinc finger RING-type signature. 1053 1062 IPR017907 -
Car01g00286 1352 SUPERFAMILY RING/U-box 1035 1081 - -
Car01g00286 1352 MobiDBLite consensus disorder prediction 779 813 - -
Car01g00286 1352 Pfam SNF2-related domain 622 999 IPR000330 GO:0005524|GO:0140658
Car01g00286 1352 MobiDBLite consensus disorder prediction 37 89 - -
Car01g00286 1352 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1188 1347 IPR001650 -
Car01g00286 1352 Pfam Helicase conserved C-terminal domain 1196 1294 IPR001650 -
Car01g00286 1352 MobiDBLite consensus disorder prediction 1 22 - -
Car01g00286 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1351 IPR027417 -
Car01g00286 1352 SMART helicmild6 1211 1294 IPR001650 -
Car01g00286 1352 MobiDBLite consensus disorder prediction 779 797 - -
Car01g00286 1352 MobiDBLite consensus disorder prediction 1151 1170 - -
Car01g00286 1352 CDD DEXDc_SHPRH-like 602 922 - -
Car01g00286 1352 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 447 1351 - -
Car01g00286 1352 SMART ultradead3 598 899 IPR014001 -
Car01g00286 1352 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 447 1351 - -
Car01g00286 1352 Pfam Zinc finger, C3HC4 type (RING finger) 1038 1074 - -
Car01g00286 1352 ProSiteProfiles Zinc finger RING-type profile. 1038 1077 IPR001841 -
Car01g00286 1352 Gene3D - 1109 1351 IPR027417 -
Car01g00286 1352 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 617 884 IPR014001 -
Car01g00286 1352 CDD SF2_C_SNF 1198 1304 - -
Car01g00286 1352 SMART ring_2 1038 1076 IPR001841 -
Car01g00286 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1031 1089 IPR013083 -
Car01g00286 1352 Gene3D - 694 800 IPR038718 -
Car01g00286 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 922 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00286 Car-Chr1 2179463 2191113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00286 503 1351 RAD5 or RAD16-like Gene Family AT1G61140 61.705 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car01g00286 SNF2_N 4.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00286 - - gmx:100805307 1781.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00286 01 2179463 2191113 Car01g00286 01 2179463 2191113 ECH