Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00278 ATGGGAACGAAGGTGATGGGTAGATGGGGCACCTGGGAGGAGCTACTCCTCGGTGGGGCCGTTCTCCGCTACGGGACACGAGACTGGAAAGTCGTCGCCGCCGAGCTCCGATCACGAACCGTTTGTCCTTACACTTTTACCCCTGAGGTATGTAAAGCCAAGTATGAAGACTTGCAAAAACGGTATTCTGGGAGCACGGCTTGGTTTGAGGAGCTTAAGAAGACAAGAGTAGCTGAGCTGAAGAGAGCTTTGGAGCTCTCTGAAGATTCAATTGGGTCTCTTCAATCAAAGCTTGAATTCTTGAAGTCCGGTAAGAATGAGAAAAAAGATGATTGTGAAAATGGATCAAGAAGTCCAGTATCGCATGTACCTTCTCATAAATTGGAGAGAGTTGAATCTTCCACTAAAGAGACATCAAAAGACGGGCTTTCCGCCGGCAGTTTCACACACGAAATGAGGACAAACTGGTCTCCTGAATGCCATGTTCCAGCTCGGTCCGTCGATGATATAGAAACGAAGCCTGAAGTTTCACAATCTTCCGAACAAGTTAAAGTTTTGAATGTAGATAATTTGGCTCATATATATGAAGGACTAGGAGTAGTAGGAGCAAGTTTTAGAAAAAGGAGAGGGAAGAGGAAAAGGAAGGATTGTAGTAAAAATATTAAGGAAGCAAGTGTGGGAGAAAGTGACTTATTAGATTCGACCGATGTTATTTCGTGGTGTAAAGAAAGTTCTACTACTAGTAACTGTGGTGAAGTTGCCAAATCTTGTGCCGATGTAAATGATCGAAATAAGAACTTGAAAAAGCATTGCACAGAAGATATGATTGAGATTTTAGATTCGGTTTTTGAAACTAAAGGTGCATCTGCCTTCCGTCGCAGACTTGATGGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCGGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAATCAAACAATTAAATCAACCATAGAACTATTCCGAGACTTGCTGCTACTCGCCAACAATGCCTTAGTCTTCTACTCGAAGAACACTCGCGAACATAAAACGGCTCAACTTCTAAGAGACATAGTCACCAAAAAAATGAGGGAGAGTTTCAAGGATAATACTATTAGTAGCAGAAAAGTCACTCAAGTTAATGAGTCTATGAAATTACCAATTAATAATCTTCATGTGAAACCAAGAAGTGTAAGACCAGGTAGCAGAAAAATCACTGCAAAAGCGATTGATGGTAACAACTCTGCATTTGGGATGACACAAGGAGCTAAGAAGCCCAGTAAAGCTGATTCTCCGCCTTCGGTTGAATCCTTAACTGTCACAAAGAAAGCTGCTTTTGGTAGACCGAAAAAAGTTGGGCGCGTGACTTCAGGTCAAAAGACTACTACTACACCGATGAAAGGAAGGAAAAGAGTTAGAACAAAGTCGTAG 1443 0.422 MGTKVMGRWGTWEELLLGGAVLRYGTRDWKVVAAELRSRTVCPYTFTPEVCKAKYEDLQKRYSGSTAWFEELKKTRVAELKRALELSEDSIGSLQSKLEFLKSGKNEKKDDCENGSRSPVSHVPSHKLERVESSTKETSKDGLSAGSFTHEMRTNWSPECHVPARSVDDIETKPEVSQSSEQVKVLNVDNLAHIYEGLGVVGASFRKRRGKRKRKDCSKNIKEASVGESDLLDSTDVISWCKESSTTSNCGEVAKSCADVNDRNKNLKKHCTEDMIEILDSVFETKGASAFRRRLDGQKRGRYKKMIRRHMDFDTIRSRISNQTIKSTIELFRDLLLLANNALVFYSKNTREHKTAQLLRDIVTKKMRESFKDNTISSRKVTQVNESMKLPINNLHVKPRSVRPGSRKITAKAIDGNNSAFGMTQGAKKPSKADSPPSVESLTVTKKAAFGRPKKVGRVTSGQKTTTTPMKGRKRVRTKS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00278 480 MobiDBLite consensus disorder prediction 123 137 - -
Car01g00278 480 Coils Coil 77 97 - -
Car01g00278 480 MobiDBLite consensus disorder prediction 105 146 - -
Car01g00278 480 PANTHER BROMODOMAIN PROTEIN 1 479 - -
Car01g00278 480 SUPERFAMILY Bromodomain 260 372 IPR036427 GO:0005515
Car01g00278 480 CDD SANT 8 55 IPR001005 -
Car01g00278 480 SMART bromo_6 268 372 IPR001487 GO:0005515
Car01g00278 480 Pfam Bromodomain 277 357 IPR001487 GO:0005515
Car01g00278 480 Gene3D - 260 380 IPR036427 GO:0005515
Car01g00278 480 MobiDBLite consensus disorder prediction 412 480 - -
Car01g00278 480 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 479 - -
Car01g00278 480 ProSiteProfiles Bromodomain profile. 283 353 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00278 Car-Chr1 2092361 2098882 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g00278 Bromodomain 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00278 - - gmx:100793951 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01538 06 15068232 15072727 Car01g00278 01 2092361 2098882 PCT