Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00260 ATGGcttctgctccatcctcttctccatcttcctcttcttcttcCAAACTATGCTTCAATTCTGACTGCAAAGACTTCAAGTCCGAAAGACCTAAGAAAGGTTGGAGACTTCGTACTGGTGACCTAGCCGAACTTTGTGATCGTTGCGGTTCTGCTTTTGAAGAAGGGAGGTTCTGTGACCTTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGCGAGACTTGTAGGAAGAGGATTCATTGCGGGTGTATTGTTTCAAGTCACACCTTTGTGTTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAACCTGCCGTGGTCACAATCTTTTTCTCTTCAAAATCGTTTATCGGAGAGACTTAGAGACTTATCTGCCAAAAATTGGAGTCAGTTAGCTGGATCAGGACCTGTACCTTGGAAGCAAGCACCCAGTTTGTTCAATCCAGCTTCTTCATCTGACCTGCCTCCAGATGGGCACTCTCTAGTTGAATTATCAAATAACTTTGACAAAATTTATGGCAATGAAAGGTTACCCGCCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATACCAGCTAATTGGAACGTCAAACTTGGTTCAAGGGAAATGGTTCTTATGAATGGAATGAGGAATGAGGACAAATCAGGACCGTGTTTTAATATGTGCCAACAACCTCATTCTCTGAAGGAAGATTCATCTTCTCAACCATTTGGTTTATCTGTAACTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAATTCATCCGCAACCAATTCCACCTCATCCAGGCAAGCAATATAGTGGCACTATGCACTTAGCTCCTGACTCATCAGGTGAAGCTCATGTTCGCAATGGGCGACCTCGAGCAGATGCTCGAGGAAGAAGTCAGTTGTTGCCACGATACTGGCCCAGGTGTACTGATCTGGAGCTACAACAAATATCTATAGATTCTAATTCTGTAATAACTCCCTTGTTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGCGGATTGGGCGTTTGGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGGAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACATTCAGTCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGTCTACAAGTACTATGCCATCTGATCAGGATAATGAAACCAATAAGACTGGAAATGGATTTTCTGCACACGGAGAAGTTGAATTGGTTGATCCTAGTTCTTGGTCAAAAGTTGATAAGTCGGGATACATAGCAAAAGAAGCACTAGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAACTTGATAATGAGGATATAATAGAACTTAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTCGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCAACTATTTTCACGAGTGATAATATGGGTGAAAGGATTCAGTGGGCTCAATGTGAAGATTGTCTGAAGTGGCGCAAATTGCCAGCATGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTTATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAGCTGAACAACTTGAGAATTTGTTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCTGCTAAGTTGGACCCCGATAATGCCGATGCTTTGGAGGGACTTGATACCCTTGCAAATCTAGCTATCCTGGGGGAAGGTGAGGCTCTCCCGACATCTTCCCAGGCCACGACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTGTGCATCCAGCCTCCCAGCGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGACGTGAGAAGAAACAATCTGAAAGAGAAGCAGAAACAACACGTAAAAAGCAGCAGCAACAGCATTCCCAGCAATTGCCTTCATCTGAAATTTTGCTTGATGACGATTCCTTGCATAATAGTAATACAGGCGATAGTAGCCCAAACCAGAACAAGGAGGGTAATGATGGTTCTGATGATGATCCTCACAGGATAAAATCATCTGTGTCTCCATTCAAAGGCCAGATCGACCTCAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCAGGTTCAGATTCTGGTGGTGTGATGAAACTACTCCATGATGCTACTGAGATGTATATCAAGCAGCAGCAGAATGTGTTGAACTCTAGTACAGGTGATTCATCAGGAAGTCAGTCACAACAGGTAGCAGATGGAGTGAGGGAAGAGAAACTTAGCAACGGTGTTATTACTCATGGTAGCAGTAGTCATAATGCTAATAAGGAACATGATCAATCTTTGTCTATGAATGTGTGA 2670 0.4288 MASAPSSSPSSSSSSKLCFNSDCKDFKSERPKKGWRLRTGDLAELCDRCGSAFEEGRFCDLFHANASGWRNCETCRKRIHCGCIVSSHTFVLLDPGGIECFTCARKNIILPSNLPWSQSFSLQNRLSERLRDLSAKNWSQLAGSGPVPWKQAPSLFNPASSSDLPPDGHSLVELSNNFDKIYGNERLPASSLEKKNEDLSGIPANWNVKLGSREMVLMNGMRNEDKSGPCFNMCQQPHSLKEDSSSQPFGLSVTYSSPNERNGQIGVTGIHPQPIPPHPGKQYSGTMHLAPDSSGEAHVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKSTSTMPSDQDNETNKTGNGFSAHGEVELVDPSSWSKVDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKLDNEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTSDNMGERIQWAQCEDCLKWRKLPACALLPSKWTCSDNLWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKLDPDNADALEGLDTLANLAILGEGEALPTSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHSQQLPSSEILLDDDSLHNSNTGDSSPNQNKEGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYIKQQQNVLNSSTGDSSGSQSQQVADGVREEKLSNGVITHGSSSHNANKEHDQSLSMNV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00260 889 SUPERFAMILY DNA-binding pseudobarrel domain 339 445 IPR015300 -
Car01g00260 889 SMART B3_2 342 442 IPR003340 GO:0003677
Car01g00260 889 MobiDBLite consensus disorder prediction 838 858 - -
Car01g00260 889 MobiDBLite consensus disorder prediction 724 740 - -
Car01g00260 889 MobiDBLite consensus disorder prediction 866 889 - -
Car01g00260 889 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 13 818 - -
Car01g00260 889 Pfam B3 DNA binding domain 342 441 IPR003340 GO:0003677
Car01g00260 889 CDD B3_DNA 340 441 IPR003340 GO:0003677
Car01g00260 889 MobiDBLite consensus disorder prediction 741 776 - -
Car01g00260 889 Gene3D - 320 445 IPR015300 -
Car01g00260 889 ProSiteProfiles Zinc finger CW-type profile. 570 620 IPR011124 GO:0008270
Car01g00260 889 MobiDBLite consensus disorder prediction 838 889 - -
Car01g00260 889 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 13 818 - -
Car01g00260 889 Pfam CW-type Zinc Finger 575 617 IPR011124 GO:0008270
Car01g00260 889 Gene3D - 574 627 - -
Car01g00260 889 MobiDBLite consensus disorder prediction 723 821 - -
Car01g00260 889 ProSiteProfiles B3 DNA-binding domain profile. 342 443 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00260 Car-Chr1 1954335 1964085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00260 277 728 B3 DNA Binding Superfamily AT4G32010 55.507 6.41e-164 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car01g00260 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00260 - - gmx:100782114 1553.88