Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00246 ATGGGAAGAACACCTTGTTGTGACAAAAATAATGGCCTCAAGAAAGGACCATGGACAACCGAAGAGGATCAAAAACTCATTCATTACATTCACAAACATGGTTATGGCAATTGGAGGACACTCCCTAAGAATGCTGGGTTGCAAAGATGTGGAAAAagttgtcgtctacgttggacaaactatctccgaccagacataaaacgtggtcggttttcatttgaagaggaagagacaatcattcaactacacagcattcttggcaacaaATGGTCTGCAATTGCGTCTCGATTACCAGGAAGGACGGACAACGAAATAAAAAACTATTGGAACACACATATTAGAAAAAGGCTTTTGAGGATGGGAATTGATCCAGTAACACATAGTCCTAGACTTGATTTATTAGACCTTTCTTCTATTCTCTATGCTTATGGTAATTCATCATCACATATAAACAACATCCAAACTCTACTTGGCATTCAACAACCTTTGGTTAATCCTGAGCTTCTCAAATTAGCTTCCTCACTCTTCAACTCATCACAACAACAAGATTATAGTAATAATCAACCTTGCAATCCTCAAATACAGAGTCAAGTTCCACGTTTTGTCCAATTTCAAGACCAATTAGTTCCACAAGTACATGCTAATGCTAATGCTTGTGCAACATTCACCAACCCTTCATTGCCTAATCAATCACATAATATGTTTGAGCCAAATGTGGAAGCATATACATCAAATTTCACTGACCTTAGTTACAATGAACAACATTCTGTTCATGATTGGCATGAAAATGGGTTTGGTTTAATTAGTACCATAGCAGAAGATGAATATATCCCTCAATTATTATCAAGCTataataataataataataataattatggttgtgataatattcaaaatCTAATGTATCAAACTTCAGATAACAGCAACCAGTTTTTGTCAACACCATCATCAAGTCCCACACCGTTGAATTCAAACTCCACAGAAGATGAGAGAGAAAGCTATGACAGTTGTAACAGATTGAATTTTCAAATGTCTGCAGATCATGTTTCAGATGCGAATGATCAGTTCATGTAA 1074 0.3147 MGRTPCCDKNNGLKKGPWTTEEDQKLIHYIHKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILYAYGNSSSHINNIQTLLGIQQPLVNPELLKLASSLFNSSQQQDYSNNQPCNPQIQSQVPRFVQFQDQLVPQVHANANACATFTNPSLPNQSHNMFEPNVEAYTSNFTDLSYNEQHSVHDWHENGFGLISTIAEDEYIPQLLSSYNNNNNNNYGCDNIQNLMYQTSDNSNQFLSTPSSSPTPLNSNSTEDERESYDSCNRLNFQMSADHVSDANDQFM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00246 357 PANTHER PROTEIN ODORANT1-LIKE 1 256 - -
Car01g00246 357 MobiDBLite consensus disorder prediction 307 334 - -
Car01g00246 357 SMART sant 14 64 IPR001005 -
Car01g00246 357 SMART sant 67 115 IPR001005 -
Car01g00246 357 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Car01g00246 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Car01g00246 357 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Car01g00246 357 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Car01g00246 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Car01g00246 357 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car01g00246 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Car01g00246 357 MobiDBLite consensus disorder prediction 307 327 - -
Car01g00246 357 CDD SANT 70 113 IPR001005 -
Car01g00246 357 Gene3D - 12 68 - -
Car01g00246 357 Gene3D - 70 117 - -
Car01g00246 357 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Car01g00246 357 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00246 Car-Chr1 1849428 1850807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00246 1 183 MYB Transcription Factor Family AT4G21440 77.487 2.81e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g00246 Myb_DNA-binding 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00246 K09422 - gmx:778071 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01495 06 14571443 14572855 Car01g00246 01 1849428 1850807 PCT