Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00230 ATGccatgtttcttcctcttcttcttctttacttcactttctcttctcaccacaatctcaatctcaatctccacagataccttaacctcatcacaaattctcagaacaaatcagacccttgaatcaacaaaaggaactttcgttcttggtttcatcccaggaacaaattccaacatttatttagccatatggtacaaaaacattcaagacagagtagttgtttgggttgcaaacagagacaatcctcttcacaattccactaatgggtttctcaaaatcggtgacaatggaaacatagttcttctcaattcatctgattcagacaacaacctcgtatggtcttccaatcaaacaacggctaaaaatccaattcttcagcttctggaaaatggaaatttagttctaagagaaactaacgtgaatgaaaatccaacaaattttctatggcaaagcttcgattacccaacagatactttgttaccagacatgaatatgggttggaaTTTTGACACAAAAATGGAAAAGCACTTAACTTCATGGAAGATCACAGGTGAAGACCCTTCAACAGGTGATTATTCATTCAAAATCGATTTTCATGGTTTACCAGAGATTTTCCTACGGAATGGTGAAAACATAATATACCGAAGTGGACCTTGGAATGGTGAAAGATTCAGTGGTGTACCAGAGATGCAACCTGACACAGATTCCATAGTTTTTAATTTTTCAACGAATGAACACGGTGTAAACTACTCATTTTCAATCGGGAATCGGTCGATTTTCTCGAGACTAGTTGTGAATTCGATAGGGGAACTTCAGCGTCTAACATGGGTAGAAAGTAGTAAAACATGGACAAAGTTTTGGTATGCACCGAAAGATCAATGTGATGATTATAAAGAGTGTGGTCCTTATGGTGTGTGTGATTCTAATGCTTCCCCTGTTTGTGAATGTGTGAAAGGTTTTAGTCCTAAGAATGAACAAGCATGGAAATTGAGAGATGGGTCTGAAGGGTGTGTTAGGAAAACGAATTTGGATTGTGAGAGTGACAAGTTTTTTCGAATGGAGAATGTGAAGTTACCTGAGACAAGTTCTGTGTTTGTGAACAAGACAATGAGTATTGTGGAATGTGGTGATTTGTGTCATAGGAATTGTTCTTGTACTGGTTATGCTAATGTTTATGTGACTAATGGAGGAAGTGGTTGTGTTATGTGGATTGGTCAACTTGTTGATATTAGAACTTATTCTGATGGTGGACAAGATCTTTATGTTAGATTAGCAGCTTCTGAGATAGATAACTCAGGATCTGCCAGTGACTCTCACAAGACAAATCACAGAGCTGAGATTGTAGGAATCACAATTTCTGCAGTTGTTATAATTTTGGGATTGGCTATCATATTATGTAACAAGAGGAAATTGCTAAGTAGATTGAATGGGAAGACAGACCAAAGAGGTTCTCTCCAAAGAAGTCGAGATTTGTTGATGAATGAGATGGTATTTTCAAGCAATAGAGGTAGCTCAGGAGAAAGGGACATGGATGACTTAGAGTTACCAATGTTTGATTTTAATACCATAACAATAGCTACAAACAACTTCTATGAAGCCAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAGGGAAGGTTGATTGAAGGCCAAGTAATTGCTGTCAAGAGGTTGTCACAAACCTCAGGAcaaggagttgaagaatttaagaatgaggtcaaattaattgtcaagcttcaacatagaaatcttgttaggttattaggttgctgcattgagaaggatgagaagctgctagtgtatgagtacatggaaaatagaagccttgatTCCATTTTGTTTGACAAAACCCGAAAACCTTTACTGGACTGGACAAGGCGATTTAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTGCATCATGATTCAAGACTCAGGATTATCCATAGAGATCTCAAGGCAAGCAACATTCTACTTGACAGCGAAATGAACCCTAAAATATCAGACTTTGGGATGGCTAGAATATTCGGCAAAGATCAAACAGAAGCAAATACTTTGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCGGTGAAATCAGATGTTTTTAGTTTTGGAGTTCTTGTACTAGAGATCATAACTGGAAATAAAAATAGAGGATTCTACTATGCAAACGATGATATGAATCTTCTAAAGAATGCATGGAGCCAATGGAGAGAAGGCAATGCATTGGAACTCATCGATTCATCGATCAGCGATTCATATACACCATCTGAAGTTCTTAGATGCATACATGTTGGACTATTGTGTGTTCAAGAACGTGCAGAAGATAGGCCAACAATGCCTTCAGTGCTGTTGATGCTAAGTAGTGAAACTGCACTAATGCCAGAACCAAGAAGTCCAGGGTTTTCCCTTGGAAAGTCAAAGAATCCTCAAGAGACTGATTCCTCTTCAAGTAAACATGATGAAACATGGAGTGTGAACCAAGTCACTGTCACATTGCTAAATGCTAGGTAG 2556 0.2891 MPCFFLFFFFTSLSLLTTISISISTDTLTSSQILRTNQTLESTKGTFVLGFIPGTNSNIYLAIWYKNIQDRVVVWVANRDNPLHNSTNGFLKIGDNGNIVLLNSSDSDNNLVWSSNQTTAKNPILQLLENGNLVLRETNVNENPTNFLWQSFDYPTDTLLPDMNMGWNFDTKMEKHLTSWKITGEDPSTGDYSFKIDFHGLPEIFLRNGENIIYRSGPWNGERFSGVPEMQPDTDSIVFNFSTNEHGVNYSFSIGNRSIFSRLVVNSIGELQRLTWVESSKTWTKFWYAPKDQCDDYKECGPYGVCDSNASPVCECVKGFSPKNEQAWKLRDGSEGCVRKTNLDCESDKFFRMENVKLPETSSVFVNKTMSIVECGDLCHRNCSCTGYANVYVTNGGSGCVMWIGQLVDIRTYSDGGQDLYVRLAASEIDNSGSASDSHKTNHRAEIVGITISAVVIILGLAIILCNKRKLLSRLNGKTDQRGSLQRSRDLLMNEMVFSSNRGSSGERDMDDLELPMFDFNTITIATNNFYEANKLGQGGFGSVYKGRLIEGQVIAVKRLSQTSGQGVEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKLLVYEYMENRSLDSILFDKTRKPLLDWTRRFNIICGIARGLLYLHHDSRLRIIHRDLKASNILLDSEMNPKISDFGMARIFGKDQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIITGNKNRGFYYANDDMNLLKNAWSQWREGNALELIDSSISDSYTPSEVLRCIHVGLLCVQERAEDRPTMPSVLLMLSSETALMPEPRSPGFSLGKSKNPQETDSSSSKHDETWSVNQVTVTLLNAR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00230 851 PIRSF SRK 1 851 IPR024171 GO:0004674
Car01g00230 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Car01g00230 851 Gene3D Phosphorylase Kinase; domain 1 496 605 - -
Car01g00230 851 PANTHER - 12 850 - -
Car01g00230 851 Pfam Protein tyrosine and serine/threonine kinase 534 797 IPR001245 GO:0004672|GO:0006468
Car01g00230 851 SMART blect_4 31 155 IPR001480 -
Car01g00230 851 SUPERFAMILY Protein kinase-like (PK-like) 512 801 IPR011009 -
Car01g00230 851 CDD PAN_AP_plant 341 425 - -
Car01g00230 851 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Car01g00230 851 Pfam D-mannose binding lectin 73 181 IPR001480 -
Car01g00230 851 SMART ntp_6 345 424 IPR003609 -
Car01g00230 851 Pfam Receptor serine/threonine kinase 486 520 IPR022126 GO:0004674
Car01g00230 851 Pfam Domain of unknown function (DUF3403) 803 851 IPR021820 GO:0004674
Car01g00230 851 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Car01g00230 851 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Car01g00230 851 CDD B_lectin 31 155 IPR001480 -
Car01g00230 851 Gene3D Transferase(Phosphotransferase) domain 1 606 809 - -
Car01g00230 851 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Car01g00230 851 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 850 - -
Car01g00230 851 CDD STKc_IRAK 536 801 - -
Car01g00230 851 MobiDBLite consensus disorder prediction 809 838 - -
Car01g00230 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 220 IPR036426 -
Car01g00230 851 ProSiteProfiles Protein kinase domain profile. 530 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00230 851 Pfam PAN-like domain 345 410 IPR003609 -
Car01g00230 851 SMART serkin_6 530 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00230 851 Gene3D - 20 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00230 Car-Chr1 1743261 1749795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00230 518 851 Receptor kinase-like Gene Family AT4G11530 58.754 1.27e-134 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g00230 PK_Tyr_Ser-Thr 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00230 - - gmx:100802437 1269.22