Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00229 ATGAAAGGTTCCACTTCTGCAAAACTCTTCATTTTATCTGCATGTTTTTTCAATAGTGTACTCTCTATTGATACATTAACTGCAACACAATCACTTGGATCTAACCAAACCCTAGTATCTCCACAAAATATATTTGAATTTGGTTTCTTTAACACAACCATTTCCAAATGGTACATAGGTATATGGTACAAGGATTTTCCAGATAAAATATATGTTTGGGTTGCAAATAGAAACAACCCTCTTGAAAATTCCAATGGAACTCTCAAAATTGAAGAAAGTGGAAACTTGGTTCTTTTCAACCAAACAAATAATCCTATATGGTCATCAAATCAAACCACAACCTCTGCTACAAACCCTGTTCTTCATCTTTCAGATGATGGAAATTTGGTTCTCAAAGAAGCACAAGAGAAAAACAACACCAACTATATAtggcagagttttgatcatccaacagatactttgttaccaggcatgaaacttggttggaacCTCGACACAGGCGTCGAGATTCGAGTAACATCATGGAAAAGCCAAGATGATCCATCAAGTGGTGATGGTTATTTCAGTCTTGATTATCATGGTATTCCAGATATTTACTTGTGGAACAAGCAACAAAGGGTGTTTAGAAGTGGATCATGGAATGGTGAGAGTTTTGGTGGAGTACCAATACTAAATACAATATCTGTTCTTAATGATAAAATTGTTGCTGATAAACATCAAGCTTATTACTATCCTGCAAGATTATTTCAGTCTAATTTGTCTAGACTTGTTGTGAATTGGACCGGTTCAATCGAACGTTATGCGTGGATCGAAAGCACTAAAACTTGGAACATAGTATGGAATGCACCTGCTGTTGATTGTGATCATTATGGAGCTTGTGGTCCATTTGGTATATGTGACTCAAATGCCTTTCCTATATGCAAGTGTGTGACAGGGTTTAGTATCAAGAATCAAGGGCAATGGAATTTGAGAAATTTTTCTGATGGGTGTGTGAGGAAAACAGAATTGGAATGTGGAAAGGATAAGTTTTTGCATATGAAGAATGTGCAATTTCCTGATACTAGAAGTGTGTTTGTGAACAAGAGTATGAATCTATTGGAATGTGAATCTAAGTGTCTCAAAGATTGTTCTTGCACTGCTTATGCTAATGCTGAGATTACTAATGGTGGCACTGGTTGTGTCATGTGGAATTATAGTCTTGTAGACATGAGACAGTTTTCTGAAGCTGGAACAGATCTCTTTATCAGATTAGCAGCTTCTGATGTAGGTGGGACAGGATCTTCTGGTGGATCTAAAAAAAATGCAGGAAAGATTGCTGGAATTACAATTGCTATAGTTATCTTGATTTTGGGAGTGATTATATTCATTTTGTGGAAAAAGAAGAGAAGACAGAAAGGGAATACTAACCACAGTGGTAATTCTGATAGAGGTCAGATAACACTGTTATCTGAGATGATGTTTTCAAATAGCAGAGATACTTCAGATCAAAGGAACATAGACGAACTGGAGTTGCCACTGTTTGAATTTCATGTCATATCAGATGCTACAAACTCATTCTCTTTAGCAAATAAACTTGGAGAAGGTGGCTTTGGAACTGTTTACAGGGGTAGGCTTGTAGATGGCCAGGAAATTGCTGTGAAGAGGTTGTCAACAAGCTCAGGGCAAGGAAATGTAGAATTCAAGAATGAGGTAAGATCAATTGCGAAGCTTCAACATCGAAATCTTGTACGGCTCTTTGGTTGCTGCATTGAGAAAGAGGAGAAGATGTTGATCTATGAGTACATGGAAAATAACAGCCTAGATTCTATTTTATTTGGTAAGTTTATGACACAATTTTAA 1839 0.354 MKGSTSAKLFILSACFFNSVLSIDTLTATQSLGSNQTLVSPQNIFEFGFFNTTISKWYIGIWYKDFPDKIYVWVANRNNPLENSNGTLKIEESGNLVLFNQTNNPIWSSNQTTTSATNPVLHLSDDGNLVLKEAQEKNNTNYIWQSFDHPTDTLLPGMKLGWNLDTGVEIRVTSWKSQDDPSSGDGYFSLDYHGIPDIYLWNKQQRVFRSGSWNGESFGGVPILNTISVLNDKIVADKHQAYYYPARLFQSNLSRLVVNWTGSIERYAWIESTKTWNIVWNAPAVDCDHYGACGPFGICDSNAFPICKCVTGFSIKNQGQWNLRNFSDGCVRKTELECGKDKFLHMKNVQFPDTRSVFVNKSMNLLECESKCLKDCSCTAYANAEITNGGTGCVMWNYSLVDMRQFSEAGTDLFIRLAASDVGGTGSSGGSKKNAGKIAGITIAIVILILGVIIFILWKKKRRQKGNTNHSGNSDRGQITLLSEMMFSNSRDTSDQRNIDELELPLFEFHVISDATNSFSLANKLGEGGFGTVYRGRLVDGQEIAVKRLSTSSGQGNVEFKNEVRSIAKLQHRNLVRLFGCCIEKEEKMLIYEYMENNSLDSILFGKFMTQF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00229 612 Pfam D-mannose binding lectin 71 176 IPR001480 -
Car01g00229 612 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Car01g00229 612 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Car01g00229 612 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 181 IPR036426 -
Car01g00229 612 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 607 - -
Car01g00229 612 SMART ntp_6 338 417 IPR003609 -
Car01g00229 612 Pfam PAN-like domain 338 403 IPR003609 -
Car01g00229 612 PANTHER - 11 607 - -
Car01g00229 612 Gene3D - 20 148 IPR036426 -
Car01g00229 612 SMART blect_4 29 150 IPR001480 -
Car01g00229 612 CDD B_lectin 29 150 IPR001480 -
Car01g00229 612 Gene3D Phosphorylase Kinase; domain 1 482 594 - -
Car01g00229 612 ProSiteProfiles Protein kinase domain profile. 519 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00229 612 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Car01g00229 612 Pfam Protein tyrosine and serine/threonine kinase 521 604 IPR001245 GO:0004672|GO:0006468
Car01g00229 612 CDD PAN_AP_plant 334 418 - -
Car01g00229 612 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Car01g00229 612 SUPERFAMILY Protein kinase-like (PK-like) 496 608 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00229 Car-Chr1 1739292 1743204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00229 434 605 Receptor kinase-like Gene Family AT4G23190 44.253 1.35e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g00229 S_locus_glycop 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00229 - - aip:107621503 744.191