Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00225 ATGGCTGAGGAGTATCAAGCTGGGATTTGTGGTGAAACATGGTGGAATATTAATAATTCAACAAGAGGTGTATTTCCACTTATGATGAACTCATCATCAACATGTTCAATTGCAGCTAATGATGGAGGCAACTATAGTACTTGGCAAAATGAATTTTTTGGTTTGAAGGAaacaacaacaacaacaaAGAGTTGTTCTATTGAGGAAACTAATACTAACTTTGATGTTTCTGATGGTTCTTTTTGTTTTCTTGATACTCATAAGCCACAACAAAGTGAATCAGCTAATTTAATTGATTCCACCTTACAAATTATGGATTTTGGACTCTCATCTCCAACTTCCTCCAATTGGAATCACTCCCTATTTGGAACTGGAAGGCCAGAAAACAATTTTCATTCAGTTCTTGAAGAAGAAACAATGATAGAATCTTCTAATAATTCACAAATACAAAAGGAATGGAACACAAAGAATATGATCTCATCTACAAGTGGAATTAGGCAAGTTTCAACACTTGATGCTTTCAAGCCAATGGACCAAGAATTTTCCTTAGATGAACAAAGTGGTTTATCATGTGGATTTCCAATTGAAACATCTAATTCCTATGATTACCCTTCAACTTTGATACAAAGTTTATTTGATCCTCAAACACAACCACAACCACAAACACATAACTCACTTTTTACCAACCCTTGTATATCTTATTCAAGTAGTGCAAATTATGGTACATCCTCAAATGAAGTATCATCACCAACATGGTCTAAAATATCTTCTCTTATGAAACCTTCAATGCCAAAACAACAACTTAGTGGATTGCAGTTTTCCAATAATACTCCTTTTTGGAATGCTTCAGCTGAGGCACTTAATGATATAAGAGCAGGAGTTTTGGCTTCATCACAAGCACAATATCAATCTCCTAATTTTGAAGATAAAAGACTAAATTGCCCAATTACTCTATTAAACAAGCTAAAGAGAGAAGAATCTCCAGAAAGAACAAAGAAAAATTCATCTGAAGGTGCAGTGAAGAGGGCAAGAATTGAGACACCATCCCCATTACCAACATTTAAGGTTTGTGGACAGGTTCGGAAAGAGAAATTGGGGGACCGGATCACTGCACTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACAGCATCTGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCGCTCCATATATGAAAAATGGATCACCCATTCAACACCACCAGGGTTGTGATAATGTGAAGGAGTCAGAAGGAAAAAAACAAGATTTAAGAAGCCAAGGGCTATGTTTGGTACCAATTGCAAGCACATTTCCGGTGACTAATGAGACCATTGTTGATTTCTGGACACCTTCATTTGGAGGCCCACTCTTTGGAAGATAG 1416 0.3637 MAEEYQAGICGETWWNINNSTRGVFPLMMNSSSTCSIAANDGGNYSTWQNEFFGLKETTTTTKSCSIEETNTNFDVSDGSFCFLDTHKPQQSESANLIDSTLQIMDFGLSSPTSSNWNHSLFGTGRPENNFHSVLEEETMIESSNNSQIQKEWNTKNMISSTSGIRQVSTLDAFKPMDQEFSLDEQSGLSCGFPIETSNSYDYPSTLIQSLFDPQTQPQPQTHNSLFTNPCISYSSSANYGTSSNEVSSPTWSKISSLMKPSMPKQQLSGLQFSNNTPFWNASAEALNDIRAGVLASSQAQYQSPNFEDKRLNCPITLLNKLKREESPERTKKNSSEGAVKRARIETPSPLPTFKVCGQVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSAPYMKNGSPIQHHQGCDNVKESEGKKQDLRSQGLCLVPIASTFPVTNETIVDFWTPSFGGPLFGR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00225 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 417 IPR036638 GO:0046983
Car01g00225 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Car01g00225 471 PANTHER TRANSCRIPTION FACTOR BHLH123 65 459 - -
Car01g00225 471 Gene3D - 356 418 IPR036638 GO:0046983
Car01g00225 471 CDD bHLH_AtbHLH_like 359 406 IPR045239 -
Car01g00225 471 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00225 Car-Chr1 1713217 1716401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00225 235 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.809 4.53e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00225 - - gmx:100794682 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00225 01 1713217 1716401 Car01g00225 01 1713217 1716401 ECH