Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00201 ATGCTCGCCGGAGTACTTATCCGACATGGGTCACCGCCACCCATTTTCCTCACTActctgttttttctctgtcttttcactttctcttactcAAATGAACTTCAATCTCTTATCAACTTTAAATCCTCTATTCAAACTTCTCACACAAACCTTTTCACTTCATGGAATCAATCAAATTCTCCCTGTAACTTCACCGGAATTCTCTGCAATTCCAACGGTTTCGTTTCACAAATCAATCTTCCAAACAGAACTCTAATGGGCACCCTTCCTTTTCATTCAATTTGCAACCTTCAATTTCTTGAGAAAATCTCTTTAGAATCAAACTTTTTGCATGGAAGCATCACTGAGGATTTGAAGAATTGCACAAACTTGAAGTACTTGGATTTGGGTGGAAATTTATTCACAGGAACATTTCCTGAGTTTTCATCTTTGAATAAATTAAAGTACTTGAATCTAAATGCAAGTGGAATTTCTGGGAACTTTCCATGGAAATCATTGGAAAATCTAACAACTCTCACTTTCTTAAGCCTTGGTGATAATCTCTTGGAAAAAAGCAATTTTCCTTTGGAGATTTTAAAGCTTGAAAAATTGTATTGGCTTTATCTAACTAATTGCAGCATTTTTGGAAATATTCCAATTGGTATTGGAAATCTAACTCAGCTTCAAAATCTTGAACTTTCTGACAACAATTTATCAGGTGAAATTCCAGCTGATATTGGAAAGCTTCAAAATTTAAGGCAACTTGAGATATATGATAATTACTTGAGTGGAAAAATTCCAATTGGATTTGGAAACCTTACAAATCTTGCTCAATTTGATGCTTCTAATAATCACCTTGAAGGTGATCTTTCTGAGCTAAGGTCCTTAAAAAATATTGAATCTTTGCAGCTTTTTCAGAACAAATTCTCAGGTGAGATTCCACAAGAGTTTGGTGATTTTAAGAATCTTACAGAACTTTCTCTTTATGATAACAAACTCAGTGGTGTTCTTCCACAAAAGCTTGGTTCCTGGATAGGAATGGAATTCATAGATGTTTCAGATAATTCACTTTCTGGTCCTATACCGCCTGATATGTGCAAGAACAATCAAATAACTGAGATAGCAATGTTGAATAACAGTTTCACAGGAAGTATACCAGAAAATTATGCAAATTGCACAGCTTTGGTTCGTTTTAGATTAACAAAGAATTCACTTTCAGGTGTTGTTCCTTCAGGTATATGGGGTCTTCCAAATTTGGAGCTTTTTGATCTTGGAAGGAACCAATTTGAAGGTTCAATTTCATCTGATATTGGAAAAGCTAAATCTTTAGCTCAATTGTTTTTATCTGAGAATCAGTTTTCAGGTGAGTTACCAATGAAAATCTCAGAAGCTTCTTCTTTGGTATCGATTCAGTTAAGTTCGAATCAAATTTCGGGTCAAATACCAGAAACTATTGGAAAATTGAAGAAACTAACTAATCTTAGTTTGAATAAGAACAATCTTTCTGGTGTTTTACCAGATTCTATTGGTTCTTGTGTTTCTCTTACTGAAATTAACCTTGCTGATAACTCTATTTCTGGTGTGATTCCAACTAGTATTGGTTCTTTGCCTACCCTTAATTCATTGAACTTTTCTTCAAACAATTTTTCTGGTGAGATTCCATCAAGTTTATCATCTCTTAGACTTAGCCTTCTTGATTTATCAAACAACCAGTTATTTGGTTCCATACCAGAATCACTAGCTATATCAGCTTTCAAAGATGGTTTCATTGGAAATCCTGGTTTATGCAGCCAGATTTTGAAAGAATTTCAACCATGTTCCTTGGAATATCACGGCTCGAGGCGTATTCGAAACCTTATATTACTTCTCATTGCTGGTTTAATGGTACTTCTGATTGTTTCATCAGCATATTTCCTCTTCGTGAGACTGAAACAGAAGAACAAGTTTGAGAAGCCGGTATTGAAGACAAATTCTTGGAATTTCAAGCAATACCATGTACTAAACATCAATGAGAATGAAATTATTGAAGGGATTAAAGCTGAGAATTTGATTGGAAAAGGAGGGTCAGGGAATGTTTACAAGGTTGTTCTTAAAAGTGGTGAAATATTTGCTGTCAAACACATTTGGACTTCAAATCAAAGTGATTACAGAAGCAGTTCAGCTATGCTGAAAAGGAGTTCAAGATCACCTGAGTATGATGCTGAGGTGGCAACATTGAGTTCTATAAGGCATGTGAATGTGGTGAAACTTTATTGTAGCATCACAAGTGAAGATAGTAGTTTGCTAGTTTATGAGTTTTTACCAAATGGGAGTTTGTGGGAGAGGTTGCATACATGTAAGAAGACTCAAATGATGTGGGAGGTTAGGTatgagattgcattaggtgctgctagaggattggagtatttgcatcatggttgtgatagagctgttatgcatagagatgttaaatcaagtaatatattgcttgatgaggaatggaagccaaggattgctgattttggacttgctaagattgtgcagggtggaggtggcaattggtctcatggcattgctggaacacttggctacatggctcctgAATATGCCTACACATGTAAGGTGACAGAAAAGAGTGATGTTTACAGCTTTGGAGTAGTACTGATGGAGTTGGTAACAGGGAAGAGACCTGTGGAACCAGAGTTTGGAGAGAATAAGGATATTGTAGGTTGGGTATGCAGTAATATTAGGAGCAAAGAAAGTGCTTTTGAATTAGTGGATTCTACCATTTCAAAAAAATTCAAAGAAGATGCCATTAAGGTGTTGAGAATCGCGGTGTTGTGCACGACGAAAACTCCATCTTCTAGACCATCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGAACCATGTGCTCCAACAAAAGTGACTGTCACCATTGATGGTTAA 2910 0.3271 MLAGVLIRHGSPPPIFLTTLFFLCLFTFSYSNELQSLINFKSSIQTSHTNLFTSWNQSNSPCNFTGILCNSNGFVSQINLPNRTLMGTLPFHSICNLQFLEKISLESNFLHGSITEDLKNCTNLKYLDLGGNLFTGTFPEFSSLNKLKYLNLNASGISGNFPWKSLENLTTLTFLSLGDNLLEKSNFPLEILKLEKLYWLYLTNCSIFGNIPIGIGNLTQLQNLELSDNNLSGEIPADIGKLQNLRQLEIYDNYLSGKIPIGFGNLTNLAQFDASNNHLEGDLSELRSLKNIESLQLFQNKFSGEIPQEFGDFKNLTELSLYDNKLSGVLPQKLGSWIGMEFIDVSDNSLSGPIPPDMCKNNQITEIAMLNNSFTGSIPENYANCTALVRFRLTKNSLSGVVPSGIWGLPNLELFDLGRNQFEGSISSDIGKAKSLAQLFLSENQFSGELPMKISEASSLVSIQLSSNQISGQIPETIGKLKKLTNLSLNKNNLSGVLPDSIGSCVSLTEINLADNSISGVIPTSIGSLPTLNSLNFSSNNFSGEIPSSLSSLRLSLLDLSNNQLFGSIPESLAISAFKDGFIGNPGLCSQILKEFQPCSLEYHGSRRIRNLILLLIAGLMVLLIVSSAYFLFVRLKQKNKFEKPVLKTNSWNFKQYHVLNINENEIIEGIKAENLIGKGGSGNVYKVVLKSGEIFAVKHIWTSNQSDYRSSSAMLKRSSRSPEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHTCKKTQMMWEVRYEIALGAARGLEYLHHGCDRAVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGGGNWSHGIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPVEPEFGENKDIVGWVCSNIRSKESAFELVDSTISKKFKEDAIKVLRIAVLCTTKTPSSRPSMRMLVQMLEEAEPCAPTKVTVTIDG 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00201 969 Gene3D Transferase(Phosphotransferase) domain 1 760 963 - -
Car01g00201 969 SUPERFAMILY L domain-like 362 574 - -
Car01g00201 969 Pfam Protein kinase domain 674 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00201 969 Gene3D Ribonuclease Inhibitor 142 360 IPR032675 -
Car01g00201 969 SUPERFAMILY L domain-like 192 425 - -
Car01g00201 969 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Car01g00201 969 SUPERFAMILY Protein kinase-like (PK-like) 662 953 IPR011009 -
Car01g00201 969 SMART LRR_typ_2 218 242 IPR003591 -
Car01g00201 969 SMART LRR_typ_2 550 580 IPR003591 -
Car01g00201 969 SMART LRR_typ_2 409 433 IPR003591 -
Car01g00201 969 SMART LRR_typ_2 313 336 IPR003591 -
Car01g00201 969 SMART LRR_typ_2 481 504 IPR003591 -
Car01g00201 969 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 962 - -
Car01g00201 969 SMART serkin_6 671 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00201 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Car01g00201 969 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Car01g00201 969 SUPERFAMILY L domain-like 30 185 - -
Car01g00201 969 ProSiteProfiles Protein kinase domain profile. 671 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00201 969 Gene3D Phosphorylase Kinase; domain 1 654 759 - -
Car01g00201 969 SMART LRR_sd22_2 266 294 - -
Car01g00201 969 SMART LRR_sd22_2 313 331 - -
Car01g00201 969 SMART LRR_sd22_2 121 146 - -
Car01g00201 969 SMART LRR_sd22_2 218 247 - -
Car01g00201 969 SMART LRR_sd22_2 169 189 - -
Car01g00201 969 SMART LRR_sd22_2 481 499 - -
Car01g00201 969 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 11 962 - -
Car01g00201 969 Gene3D Ribonuclease Inhibitor 506 581 IPR032675 -
Car01g00201 969 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Car01g00201 969 Gene3D Ribonuclease Inhibitor 361 433 IPR032675 -
Car01g00201 969 Gene3D Ribonuclease Inhibitor 434 505 IPR032675 -
Car01g00201 969 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00201 Car-Chr1 1552277 1556293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00201 17 966 Receptor kinase-like Gene Family AT1G09970 57.083 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car01g00201 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00201 - - ccaj:109814095 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00201 01 1552277 1556293 Car01g00201 01 1552277 1556293 ECH