Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00199 ATGTCTCCACTTCCAGCAAACAACAGCAATATTTGTATTTGTTTAAGCCAGCATGTCCAAAGACTTGACTCAACCATTCCCATTGGAAACAAGATCATCCATTCGTGGGATTCATCTTTGGTTGTGGTGAACTTATCAACTACTTTGAAAGCAGCAATATCTATTCATCAgatgagttctcatatggagatttcatcaatcaGAGGCTTACCTGAATTGGGGATAATGGAAGATCCTAACTTTCTGCATCAATGGAATCACCACATAAGCTCTATTGATACTTTTGGAGATGCTTTACAAAAACATCCAAACTTCAACACCAAAACAAGCATGGAAACTTTGCTTGCTGCTGGAAGCGAAAGACCGATGAAACAGCTAAAAAACAACAGCTGGAATTACAACAACAGTCCTCAAACATCAGACACACACCATAATCAATTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCTAAAATCGATAACGCTACGCTTGCCAACATGTTGATTAATCAAGGAAACTTGGGGAATCAAAATCATGTCTTCAAAGCTTTTCAAAAGGCCAAAGATGTTGACACTCGTCCTAATAAGCTTTCTCAAGCTCATGATCATATTGTAGCCGAAAGGAAGCGTCGAGAGAAGCTTAGCCAGCGATTCATCGCGCTATCTGCTCTTGTTCCAGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCAATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAATGTTCTTGAGGAGGAACAGAAAAGGAAGAAAACTGTGGAATCTGTTGTAATTGTGAAGAAATCTCAACTTTCAAATGATGGTGAAGACTCTTGTTCAGACACAGATAATAGTACATTTGATGAAACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAATGTCCTCATAAGACTACACTGTCTTAAGAGTCAAGGAGTTATTGAGAAAACAATTAGTGAAATTGAGAAACTCAATCTAAAAGTCAACAATAGCAGTGCCTTGACTTTTGGGAATTTCACACTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACATTGAAGGATGTTGTGAGAAAGCTACGCTCAGCTTATTCGTCTTTCATGTGA 1143 0.3745 MSPLPANNSNICICLSQHVQRLDSTIPIGNKIIHSWDSSLVVVNLSTTLKAAISIHQMSSHMEISSIRGLPELGIMEDPNFLHQWNHHISSIDTFGDALQKHPNFNTKTSMETLLAAGSERPMKQLKNNSWNYNNSPQTSDTHHNQLGLLKPKSEMVCPKIDNATLANMLINQGNLGNQNHVFKAFQKAKDVDTRPNKLSQAHDHIVAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVNVLEEEQKRKKTVESVVIVKKSQLSNDGEDSCSDTDNSTFDETLPEIEARFCERNVLIRLHCLKSQGVIEKTISEIEKLNLKVNNSSALTFGNFTLDITIIAQMDVGFCMTLKDVVRKLRSAYSSFM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00199 380 Pfam Helix-loop-helix DNA-binding domain 205 250 IPR011598 GO:0046983
Car01g00199 380 SMART finulus 206 255 IPR011598 GO:0046983
Car01g00199 380 Coils Coil 239 266 - -
Car01g00199 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Car01g00199 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 263 IPR036638 GO:0046983
Car01g00199 380 CDD bHLH_AtNAI1_like 200 275 - -
Car01g00199 380 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 63 379 - -
Car01g00199 380 PANTHER BHLH TRANSCRIPTION FACTOR 63 379 - -
Car01g00199 380 Gene3D - 191 265 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00199 Car-Chr1 1532081 1535607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00199 200 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.842 8.87e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g00199 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00199 - - gmx:100798018 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00199 01 1532081 1535607 Car01g00199 01 1532081 1535607 ECH
Car06g01454 06 14046140 14048437 Car01g00199 01 1532081 1535607 PCT