Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00182 ATGGGAAGAGGAAAGATTGCAATTAGAAGGATCGATAATTCCACAAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAATTATCCATTTTATGTGATGCTGAAGTTGGATTGATTGTTTTTTCCAGCACTGGAAAGCTTTATGATTATTCAAGCACCAGCATGAAATCTATTATTGAACGCTATAACAAACAGAAAGAGGAACAGCATCACCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGGAAGAAAGCCACAGCAGGCAATTGATGGGTGAAGGACTTTCTGGCTTGGGTATTAAAGAACTACAAAATCTGGAAAACCAACTGGATATGAGTCTAAAGGGTGTCCGAATGAAAAAGGATCATATTTTGACTTACGAGATTAAAGAACTACACCAAAAGGTATTGGGAGTCTGGTTTTCTTGTTGTATTTGA 501 0.3812 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSIIERYNKQKEEQHHLMNPASEVKFWQTEAASLRQQLQYLEESHSRQLMGEGLSGLGIKELQNLENQLDMSLKGVRMKKDHILTYEIKELHQKVLGVWFSCCI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00182 166 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 Pfam K-box region 84 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00182 166 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 156 - -
Car01g00182 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car01g00182 166 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 - -
Car01g00182 166 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Car01g00182 166 ProSiteProfiles K-box domain profile. 86 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00182 166 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Car01g00182 166 Coils Coil 86 106 - -
Car01g00182 166 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Car01g00182 166 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00182 Car-Chr1 1374065 1385349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00182 1 157 MADS-box Gene Family AT4G37940 68.153 3.55e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car01g00182 K-box 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00182 K09264 - gmx:100805092 270.011