Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00148 ATGGACACCGCCGCCGCCAATCCATTGGAACCAATGGCCACCTATCTTGTTCGCCGCCATCCCATCCAGCTCCGCTCCATTGCTTCTTCTCCAGATTCCAATCTTCATTTTCCTCTCCACATCGACTTCGCAGAGTTGATGGAGTATGATCCTCGCATTGCTCGCCTCATCTTTTCCCAACCCGATACCTACCTCCAACTATTCGATGATGCTGCTCTTTGGGCTCATAGAATCGTATTAGCAGAAATGGCTGCTGACGAAAAGAACAATGTGGTCGAGAAAAAATTCATTCACGTTCGCATTAATGTCAATGGTTCTCCCCTTGAATGTCCTGAGACTTTTCCGAGCATAGGACGTGTTCGGGTGCAGCACCGTGGAATTCTCCTCACTCTCAAAGGGATAGTAATCAGGTCTGGTTCAATCAAAATGCATGAAGGAGAGAGGAAATACATGTGCCACAAATGCAAAAGCAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCATTTTGCCCAAGTCAGAAGTCAAAGCCCTGTGGAGGCACAAAATTTCAGTATGTAGAGAATACTATAGTGTGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTTCTAGGTGTTGGTGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAGTCAATGGATTGAAATCAGAAACTGATATTTCTGATGACGTTGTTATGAAATTCAAGCAGTTTTGGGGTCGCTTCAAAGATGCACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACAGTCAAGCTGGCTGTTACATTAACACTAATCGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCTCACTTACTATTGGTCGGTGATCCCGGCACTGGAAAATCTCAGTTTCTGAAATATGCTGCAAAATTGAGCAATCGATCTGTTATTACAACTGGGTTGGGAAGCACGAGTGCTGGATTGACCGTTACTGCCGTGAAGGATGGGGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGCACCAAAACAACAGTGTTTGGCGCCACAAATCCTAAGGGACATTATGATCCTGATCAACCTCTATCTGTCAATACAACCCTCTCTGGCCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCACATTCTGTCTGAGGCAGAACCAGATAGAACATCCAATGATGAAGATCTGGCAAATACTTGGCCTCTTCCTACACTCAAGAGGTATATACACTATGTGAAAGAAAATTTCAGACCAGTCCTTACAAGAGAGGCCGAAACAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCGACTGATAATGCGGCTAGGACAACCGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACTGCTATTTTATGCATAGAATCCTCGATGACTACCTCAGCTATTGTGGATTGCATCGGGAATGCTCTGCATTCCAATTTCACTGACAATCCTGATCAGGAATATGCAAAGCAAGAAAAGTTGATCCTAGAAAAATTGGGATGA 1953 0.4424 MDTAAANPLEPMATYLVRRHPIQLRSIASSPDSNLHFPLHIDFAELMEYDPRIARLIFSQPDTYLQLFDDAALWAHRIVLAEMAADEKNNVVEKKFIHVRINVNGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGSIKMHEGERKYMCHKCKSSFTVYPEVEARNSISLPSFCPSQKSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRVNGLKSETDISDDVVMKFKQFWGRFKDAPLKGRNAILRGICPQIFGLFTVKLAVTLTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKYAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTSNDEDLANTWPLPTLKRYIHYVKENFRPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQEKLILEKLG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00148 650 SMART AAA_5 347 496 IPR003593 -
Car01g00148 650 CDD MCM9 308 612 - -
Car01g00148 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 622 IPR027417 -
Car01g00148 650 PANTHER DNA HELICASE MCM9 33 649 - -
Car01g00148 650 Pfam MCM P-loop domain 307 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 Gene3D - 23 103 - -
Car01g00148 650 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 33 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 346 361 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 404 418 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 432 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 Gene3D - 120 248 IPR012340 -
Car01g00148 650 ProSiteProfiles MCM family domain profile. 305 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car01g00148 650 SUPERFAMILY Nucleic acid-binding proteins 36 256 IPR012340 -
Car01g00148 650 Pfam MCM AAA-lid domain 531 612 IPR041562 -
Car01g00148 650 Pfam MCM OB domain 120 248 IPR033762 -
Car01g00148 650 Gene3D - 284 618 IPR027417 -
Car01g00148 650 Gene3D - 144 200 - -
Car01g00148 650 SMART mcm 113 614 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00148 Car-Chr1 1127153 1137883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00148 3 637 Core DNA Replication Machinery Family AT2G14050 75.000 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00148 K10738 - gmx:100776255 1128.24