Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00143 atgaaggatgaagaagaacaaaaaTCAACGGTGAAGATGGATTTGTTATCGTTCATTGATTCAACCACTCTCTCACAGTCTGAACTTCACGCTCTTTCTCTCTCTTCTCTCACCACCTTCGACCTAACTTCTAcgcgccaaaccgtcactcctaaaatcgatccatcaatcttcaaccacagctccggttcttaccgtcaaacttattctcgacctcgccgtcgttgccgtgttgcaccgcttcttCCAACTCCGTCTCTCCCCTCCGACCACCGCGTCATCGTCGATTACCTCAAGCAATTCATTAGAGAAGATCCTAAGTTCGATCAGGTGGAGCTTCTTCAGCCTACTATTACTTCCCCGCCGGTGATATTTGCTGGCGGAGAGAGGAAGAGGAAGAGAGGGAGGAAACCTAAAGTGAAAGTGCATTTGGATGAGTGTTACAGAGGGATGGAGATTGTGAATAAAAATGGCGTTGTTATTGATCTCGCTGCGTTGTCGAATGCCGAAGATCTGTTCGCCGGAGAGCTTGCGAGAAGGACGGAGGGGTTGAGTGGTGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAATGGGGAagtaggaggaggaagaggaggaTCGTTGATGCTGCTGATTTTGGAGACGTGTTGCCTCTTGGTTGGAAACTTCTTCTCAGTTTGAAGAGAAAAGATGGTCGTGCATGGATTTATTGCCGCAGATATATTAGCCCTAGAGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCTTTTCGGTCAACCTGATTTACAGTTACAAATCAGTCATCGGAGTGAAAATGTACTGCAGGAACAGAGAGTGACTGCTGAAAATTCTGCAGGTGTTATCCGCGAGGAGCAGGATCAACGACAGATTGTTGCCACTAACTCGGATGTGTCTGGTTTATCTGTCTCTAATGAACGATTGAAGGAAATTGCCTTGTTGGAGATGGAGAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGCGTACTTGCAGCACCTATTGTCTATTCACCAAAGGACGACGAGGCGGTATCGACTTGGTTCATCTGTTGGAGATGGAGTTATAATGAAAGATGGCAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTTTTGGAAAGGCGTCGCTACAATGGTCATGTTGGGATTCATGTTAGGAATTATGTCAGGAAAGCTGAAGATTTACCGGGTCAGCCTAATGTCCTGAGACAAGACAAGTCCCCCGTCAGGGAGGAGATGCCTTCAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCATGGAACCATATTGTTCATCTAAACTGAATACGATTCCCGTTTCAGATATTGCAGGTGGTGACTTAGATGAAGAATTAAATGTGGAGTCTCCGATCAATGAATGGCAAATGGAGGAGAATTCGATTGGCAAAAATGATAGTCCTAGTTTACCCATGGATGGGACAGTAGAGGAAATTGACGAAGATAATCAAGTTGTTGATGCAAAGATGTTTAGTTTTCTAGATAACACGTGCTTGTTATCTGTAAATAAGCAAAATGTTGATGCACCTGATACTTCTAATGGACAATGTGACGTGGCGCTGACTGTTGAGGGGTTTGATCATTCTGGGATCGATCTGCGAGGAGTTTCTCAAAGTCCGTTGCTCCCTTTATCTGGGAATCACATGATACCTGGATCTGAGAAGAGTGAAAGTTCTGGTCGCACTTATACTAAGGGGCATCTTAAACTTGATGGAGACAATAGTAATAAGAGTGGCTTGAAAATTGGTTTAGATGGCTGCAAGGATGTACCTGTTGTTGCTAATGTTCAAGTGACAGCAATGCCAGCATCTAAAGAAAATGTTGTACAATCTAGGGTTTGTAACTTCTCTGTATCCCCAGAACAATCTTTGGATTCTTTTTCTGCATTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATAGGTTCTCTCGAGTATGATTTTGCAAGTGTTCAAGGTTCTCTTGATGTGTCAACTGATTTGGCACATAGCATAGTGGTGCAAGGGACATGTGCATCCTCAGCTCAGTCTGCATTACAAGAAGTTATGTTAAATGTGGATGAGAGAAACCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAATTACAATCAGATTCTGTTGGATTCATGTGTCCGGCTTGTAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGTCACATTTAG 2379 0.4027 MKDEEEQKSTVKMDLLSFIDSTTLSQSELHALSLSSLTTFDLTSTRQTVTPKIDPSIFNHSSGSYRQTYSRPRRRCRVAPLLPTPSLPSDHRVIVDYLKQFIREDPKFDQVELLQPTITSPPVIFAGGERKRKRGRKPKVKVHLDECYRGMEIVNKNGVVIDLAALSNAEDLFAGELARRTEGLSGEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPRGQQFVSCKEVSSYLQSLFGQPDLQLQISHRSENVLQEQRVTAENSAGVIREEQDQRQIVATNSDVSGLSVSNERLKEIALLEMENLADVQIHDLFECHKCSMTFDEKDAYLQHLLSIHQRTTRRYRLGSSVGDGVIMKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKAEDLPGQPNVLRQDKSPVREEMPSRISKMDALIEIAQNSIMEDSVMEPYCSSKLNTIPVSDIAGGDLDEELNVESPINEWQMEENSIGKNDSPSLPMDGTVEEIDEDNQVVDAKMFSFLDNTCLLSVNKQNVDAPDTSNGQCDVALTVEGFDHSGIDLRGVSQSPLLPLSGNHMIPGSEKSESSGRTYTKGHLKLDGDNSNKSGLKIGLDGCKDVPVVANVQVTAMPASKENVVQSRVCNFSVSPEQSLDSFSAFSSDKGFQELRLEDIGSLEYDFASVQGSLDVSTDLAHSIVVQGTCASSAQSALQEVMLNVDERNQLTTVCVWCGIEFNHDAVNSELQSDSVGFMCPACKAKISGQINVLDSGSPNAGHI 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00143 792 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 210 282 IPR001739 GO:0003677
Car01g00143 792 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
Car01g00143 792 Gene3D Classic Zinc Finger 320 418 - -
Car01g00143 792 Gene3D - 200 309 - -
Car01g00143 792 SUPERFAMILY DNA-binding domain 216 265 IPR016177 GO:0003677
Car01g00143 792 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 8 781 IPR037472 -
Car01g00143 792 SMART c2h2final6 343 366 IPR013087 -
Car01g00143 792 SMART c2h2final6 390 412 IPR013087 -
Car01g00143 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 371 IPR013087 -
Car01g00143 792 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Car01g00143 792 MobiDBLite consensus disorder prediction 595 614 - -
Car01g00143 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Car01g00143 792 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 8 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00143 Car-Chr1 1089088 1093813 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g00143 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00143 - - gmx:100526917 955.281