Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00136 ATGGCGGAGCCTCCTTCGTATGGATTAGGTCCTCGATTAGATATGCAGCAATTACAATTTGAAGCTCAGCATCGGTGGTTGCGACCAGCAGAAATTTGTGAAATTCTTTGTAATTATCGGATGTTTCATATCACATCAGAACCTCATATAAGGCCACCGAGTGGTTCACTTTTTCTTTTCGACCGGAAGGTTTTGAGATACTTTAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACATTGCTACTACGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTATTGGATGCTTGACCCGGAAATGATGCACATAGTATTTGTCCACTATTTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAACAGTGATTGCAGTGTGCCTTCACTGAGTACAGACCCCATGAGCCCAACTAGCAGCTTGGCATCTTTACGCGAAGATGCTGATTCAGGTGATCATGGACAGTCGTCAGTTTCTGGAACGGATTATATCCCACTTGTTGACATGGATAAATATAGGGGAAATGATGCTACTTGCATCGATGGCCTAAAAGCACATGACATGGCATCATGGGACACAGTCTTGCAAAGCACTGGCGAGTTGCATGCTGATCCTTCTCTTGTATCTTTTCCTTCCATCCCATCTAGTTCACTGGCAAACATCCTTGACCAAGAACAGAACATCTTCGGTGACTTTTCAATGAGCAGAAGTGACCTCACTATTGGAGCAGGGAGTTCTCAGCCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACTGGACACATGCCAAGCTTAACCCAATCATTGAGTTTAGAATTTGGATCTGATTATGGCACTGGTTTACTAGGGAATGAAGCTCAAAATGAAAGTTCTGAAATTGATCCTGTCATGTTTAGTTTTCACGGTGAGCCAAAAGAGAAGCTTGCACAGCAAAACTATCTGGAAAAGAAGGTAGAAGGACACCTGCAAGATGAACTAAAGTCCAATTGCGCAAATGAAGTTCACATCGAAGAAACTATCAACTATCCCTTATCTGTTAGACGCACATTATTGGATAGCAATGAGAGCTTGAAGAAGGTTGATAGCTTCTCTCGATGGATTACTAAAGCACTTGGAGAGGTGGATAATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGATAGATGATACCTCACTGAGCCCATCTCTATCTCAGGACCAACTTTATAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGGCTCAGACACTGAGGTGTTGATTATTGGATCGTTTTTAAAGAGTCAACCAGAGGTGACGACCTATAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCGGAGGTTGTAGCTAATGGAATTCTGTGCTGTCAAGCTCCTCCTCATAAGGTTGGGCGAGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGTGAGGTGCGGGAATTTGATTTCAGAGAGGGTTATTCTAGCAATGTAGATTATACAGATTTTTTCAACAGTTCAAATGACATGCTACTTCATTTGCGACTGGATAAATTTCTTTCTTTAAAACCAGTGCACCCTTCAAATCAAGCCTTTGAGGGTGATATGGAGAAAATAAACTTAATTTTTAAGCTTATTTCACTGAGAGAGGAAGAAGACTATTCCAGTAAGGAAGAGAAGACTGTAGAGATGAATATATCACGACACAAAGTGAAGGAGCATCAGTTTCACAGGCAGTTTAAAGAGAACCTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGACGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATTACTGGGCAATAACCCCAATTTTAATTGCTGGAGTTAATGTCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCGGCATCCTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCATTGACGGATCCATCTCCAGAATTTCCTTCAGGTAGAACAGCTGCAGATCTCGCCTCTAGCAATGGGCACAAAGGAATCTCTGGTTTTCTAGCAGAGTCTTCATTAACCAGCCACCTTGAATCCCTCACAGTGGATGATAAACAAAAAGGTGGTCAGCAAGAAATTTCAGGAACGAAAGCAGTGCAGACAGTTTCGGAACGAACTGCAACACCTGTGGTCTATAATGATATGCCTGATGGCCTCTGCCTTAAGGATTCTCTTACAGCTGTCCGTAATGCTACACAAGCTGCTGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAAAGGAAGCAGTTAACTCAGTATGAGGATGACGAGTTTGGTTTGTCAGATCAGCGGGCTCTATCCCTTCTAGCTTCTAAAGTGTGCAAATCAGGACAACGAGATGGTTTAGTCAATGTTGCTGCAACTCAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTGAAAGAATTGTTAAAATCCAGGCCCATGTGAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTATCATATGGTCTGTGGGAATCCTGGAGAAAGTTATATTACGCTGGAGACGCAAGGGTAGTGGTCTTCGTGGGTTTCGACCAGATACCCTTAATAAAGCCCCCAGCCAACAAAGTGATTCTCTAAAAGAGGATGATTATGATTATCTAAAGGAAGGACGGAAACAAAAAGAAGAAAAAATCGAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCGGAGGCACGGGCTCAATACCGACGCGTGCTAAATGTTGTTGAAGACTTCCGTCAAAAAAAGGATAGTAATATGGGTTTGATCAGTTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGACAATTTTATTCCTATAGCATTTGATTGA 3072 0.4212 MAEPPSYGLGPRLDMQQLQFEAQHRWLRPAEICEILCNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLDPEMMHIVFVHYLEVKGNKSNIGGNSDCSVPSLSTDPMSPTSSLASLREDADSGDHGQSSVSGTDYIPLVDMDKYRGNDATCIDGLKAHDMASWDTVLQSTGELHADPSLVSFPSIPSSSLANILDQEQNIFGDFSMSRSDLTIGAGSSQPLQSNWQIPFEDNTGHMPSLTQSLSLEFGSDYGTGLLGNEAQNESSEIDPVMFSFHGEPKEKLAQQNYLEKKVEGHLQDELKSNCANEVHIEETINYPLSVRRTLLDSNESLKKVDSFSRWITKALGEVDNLNMQSSPGISWSTDECGHVIDDTSLSPSLSQDQLYSINDFSPKWAYAGSDTEVLIIGSFLKSQPEVTTYNWSCMFGEVEVPAEVVANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDFREGYSSNVDYTDFFNSSNDMLLHLRLDKFLSLKPVHPSNQAFEGDMEKINLIFKLISLREEEDYSSKEEKTVEMNISRHKVKEHQFHRQFKENLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLGYYWAITPILIAGVNVNFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPEFPSGRTAADLASSNGHKGISGFLAESSLTSHLESLTVDDKQKGGQQEISGTKAVQTVSERTATPVVYNDMPDGLCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLSDQRALSLLASKVCKSGQRDGLVNVAATQIQKKFRGWKKRKEFLIIRERIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPDTLNKAPSQQSDSLKEDDYDYLKEGRKQKEEKIEKALSRVKSMVQYPEARAQYRRVLNVVEDFRQKKDSNMGLISSEETVDGVEDLIDIDMLLDDDNFIPIAFD 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00136 1023 SMART iq_5 846 868 IPR000048 GO:0005515
Car01g00136 1023 SMART iq_5 869 891 IPR000048 GO:0005515
Car01g00136 1023 MobiDBLite consensus disorder prediction 146 168 - -
Car01g00136 1023 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Car01g00136 1023 MobiDBLite consensus disorder prediction 146 183 - -
Car01g00136 1023 Gene3D Immunoglobulins 431 527 IPR013783 -
Car01g00136 1023 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 173 1023 - -
Car01g00136 1023 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 147 - -
Car01g00136 1023 Pfam IPT/TIG domain 438 513 IPR002909 -
Car01g00136 1023 SMART CG_1_2 18 136 IPR005559 GO:0003677
Car01g00136 1023 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 147 - -
Car01g00136 1023 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 173 1023 - -
Car01g00136 1023 Gene3D - 847 894 - -
Car01g00136 1023 SUPERFAMILY E set domains 438 523 IPR014756 -
Car01g00136 1023 SUPERFAMILY Ankyrin repeat 614 732 IPR036770 -
Car01g00136 1023 ProSiteProfiles Ankyrin repeat region circular profile. 671 697 - -
Car01g00136 1023 Gene3D - 599 742 IPR036770 -
Car01g00136 1023 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Car01g00136 1023 SMART ANK_2a 671 700 IPR002110 GO:0005515
Car01g00136 1023 SMART ANK_2a 638 667 IPR002110 GO:0005515
Car01g00136 1023 SMART ANK_2a 710 739 IPR002110 GO:0005515
Car01g00136 1023 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515
Car01g00136 1023 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Car01g00136 1023 Pfam IQ calmodulin-binding motif 872 891 IPR000048 GO:0005515
Car01g00136 1023 Pfam IQ calmodulin-binding motif 850 867 IPR000048 GO:0005515
Car01g00136 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 897 IPR027417 -
Car01g00136 1023 ProSiteProfiles IQ motif profile. 848 876 IPR000048 GO:0005515
Car01g00136 1023 Pfam Ankyrin repeats (3 copies) 619 699 IPR002110 GO:0005515
Car01g00136 1023 ProSiteProfiles IQ motif profile. 870 894 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00136 Car-Chr1 1050347 1062013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00136 1 989 CAMTA Transcription Factor Family AT5G64220 53.237 0.0 1042
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Car01g00136 CG-1 5.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00136 K21596 - gmx:100818124 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01382 06 13514481 13523221 Car01g00136 01 1050347 1062013 PCT