Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00118 ATGGAACGAGTGACTTCATCTTCTAAAGCTTCCTTTCTTTTTTGGGCTATTTTGGTGTTTGATTTGTTGCTTAAATCTTCTTCCAATACGGAAGGTGACGCCCTGAATGCATTGAAGAGCAACTTGAATGATCCTAACAATGTTCTTCAAAGTTGGGATGCTACTCTTGTCAATCCTTGCACGTGGTTTCATGTTACATGCAATGGTGATAACAGCGTGACCCGTGTTGATCTTGGAAATGCTGAACTTTCCGGTACACTGGTTTCAAACCTTGGTCAGCTCCCAAATTTGCAGTACTTGGAACTTTATAGCAATAATATAACAGGAAAAATCCCAGAAGAGCTAGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACCATTTAAGTGGTCCCATACCAAATACATTGGGCAAGCTTGGAAGATTACGTTTCTTGCGTCTCAATAATAACAGCTTGACTGGAGGCATTCCCGTGTCTTTGACAACTGTTACAACGCTGCAAGTTCTTGATCTCTCAAACAACCAGCTAGAAGGGAATGTTCCAGTGAATGGTTCATTTTCATTGTTTACTCCTATCAGTTATAACAATAATCCTCGCTTGAAACAACCAAAAAACGCTCCTGCGCCACTTTCTCCACCGTCACAAGCTTCTTCAGGTAGCAGTAACActggtgctattgctgggggagttgctgctggtgctgctctgttgtttgcagcccctgcAATTGCACTTGCGTATTGGCGAAAAAGAAAACCACAGGATCATTTCTTTGATGTTCCCGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCTAGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCGGATGGCAATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAGGGCGGGGAGCTGCAATTTCAAACAGAAGTCGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACTGAACGCTTGCTTGTGTATCCTTACATGGCTAATGGAAGTGTAGCATCATGCTTACGAGAACGTAATGAATCTGAACCGCCGCTTGAGTGGAAAATGCGGAAGAATATTGCGCTGggagctgccagggggcttgcctacttgcatgatcattgtgaccctaagattattcaccgtgatgtcaaagctgcaaatatattgttggatgaggaatttgaagcagttgttggagattttggtttagcaaagcttatggattacaaagatacacatgttactactgcagttcgtggtacaattgggcatatagcacctgagtACTTGTCAACTGGAAAGTCTTCAGAAAAGACTGACGTTTTTGGATATGGCGTGATGCTTCTTGAACTAATAACTGGACAAAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGTTGGAAACACTGGTAGATGCAGAATTAAAGGGAGATTATGATGATGATGAGGTAGAGCAGTTAATTCAAGTAGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTGAGAATGCTAGAAGGCGATGGTTTGGCCGAAAAATGGGAGCAATGGCAAAAAGAAGAGACGTACCGACAAGATTTTAACAACAATCACATGATGCATCACCCTAATGCAAATTGGATAGTAGTAGACTCAACCTCACATATCCAGCCAGATGAACTCTCAGGTCCAAGATGA 1857 0.3613 MERVTSSSKASFLFWAILVFDLLLKSSSNTEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNAELSGTLVSNLGQLPNLQYLELYSNNITGKIPEELGNLTNLVSLDLYLNHLSGPIPNTLGKLGRLRFLRLNNNSLTGGIPVSLTTVTTLQVLDLSNNQLEGNVPVNGSFSLFTPISYNNNPRLKQPKNAPAPLSPPSQASSGSSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGNLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERNESEPPLEWKMRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELKGDYDDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMMHHPNANWIVVDSTSHIQPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00118 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Car01g00118 618 PANTHER BNAA08G11770D PROTEIN 11 618 IPR031048 GO:0004675|GO:0005102|GO:0006468
Car01g00118 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 618 - -
Car01g00118 618 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Car01g00118 618 SUPERFAMILY L domain-like 28 195 - -
Car01g00118 618 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Car01g00118 618 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Car01g00118 618 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Car01g00118 618 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Car01g00118 618 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Car01g00118 618 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00118 618 MobiDBLite consensus disorder prediction 200 225 - -
Car01g00118 618 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00118 618 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Car01g00118 618 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00118 Car-Chr1 926290 931977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00118 13 618 Receptor kinase-like Gene Family AT4G33430 76.947 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Car01g00118 Pkinase 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00118 K13416 - gmx:100800522 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00118 01 926290 931977 Car01g00118 01 926290 931977 ECH