Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00113 ATGGATAATAACAGTATTAACAATGTGAACCTTCCACCCGGATTTCGTTTTTATCCAACAGATGAAGAGCTTGTACTTCATTTCCTTCACAGAAAAAAAACACCACTCTTACCTTTCCACCCTGATGTCATTCCTGATCTTCACCTTTACTCATATGATCCATGGCAACTTCATGGTAGAGCTTTGGCTGAGGGAAACAAATGGTATTACTATAGCAGAAGGAGTACACAAAATAGAGTCACTTGCAATGGTTATTGGAAGCCAACAGGAATAGAAGAGCCAGTGTTTTGTAGCACCAAAAACAACAGAATTGGCATCAAGAAACATTTTGTCTTTCATATGGGAGAATCAGATTCTGTTGGTATCAAAACCAATTGGATCATGCATGAATTTCGTCTATCACATAGTTCTACTAATTCCTCTTCCTCATCATCCAAAATAAAATCACAACCAATAAAAGATTATAGTAAATGGGTGATATGTCGTGTATATGAGAGCAAAGGAGATGACGACGACGACGGAACGGATCAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATCATTGGATGATTTTGATGAAATAAGCTTACCAAATTATAACTAA 606 0.3696 MDNNSINNVNLPPGFRFYPTDEELVLHFLHRKKTPLLPFHPDVIPDLHLYSYDPWQLHGRALAEGNKWYYYSRRSTQNRVTCNGYWKPTGIEEPVFCSTKNNRIGIKKHFVFHMGESDSVGIKTNWIMHEFRLSHSSTNSSSSSSKIKSQPIKDYSKWVICRVYESKGDDDDDGTDQLSCLDEVFLSSLDDFDEISLPNYN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00113 201 ProSiteProfiles NAC domain profile. 11 166 IPR003441 GO:0003677|GO:0006355
Car01g00113 201 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
Car01g00113 201 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 8 196 - -
Car01g00113 201 Pfam No apical meristem (NAM) protein 12 133 IPR003441 GO:0003677|GO:0006355
Car01g00113 201 PANTHER NAC TRANSCRIPTION FACTOR 56 8 196 - -
Car01g00113 201 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00113 Car-Chr1 896331 897526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00113 1 167 NAC Transcription Factor Family AT1G52890 39.655 3.39e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g00113 NAM 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00113 - - cam:101504837 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00113 01 896331 897526 Car01g00113 01 896331 897526 ECH
Car06g01356 06 13281365 13282757 Car01g00113 01 896331 897526 PCT