Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00080 ATGTCTCTAACAGGCCGTCCTCGTGTCGTCGTCAATGGAGTTCGAAGAATGAGAACCTTCCACTATTTCTGGTGTCTCAATTGCCAACGTACTGTGAGAATACCCTCAACAATAACAATGCATGCCTCTATCTGCCCCTATTGCTTCCATCAATTACGTTATGAACTTGATGTATCAAGGACAAGACTTTCATCTAATAATCAATTAATGCATAATTTGGCTTTCATCCTTGATCCATCTCTCAGAAGacaaaaccaaaacaacacaacaccacaATGGGAAACAGAACATGAACATGatcaaaatcaaaatcaaaatcaaaatcCACAAACATGGATTACTCTTAGATTTGTAAGACCAACTACTCCACCAAGTCCTATTTCCCCACCACAGCAAAACTTGGATCCACAACCCAATAACATCCCTTCATTAGATGAGTTCTTTGATGGAATGATTGAAAACAACATTCGACCAGGGCCGCCTCCTGCGTCGCCTTCAGCTATCGAAGCCTTGCCTATGGTGAAAGTGACAGAAACTCAACTGTCAAGTGATCCAAATTGTCCAATATGTAAAGATGAATTTGAGGTTGATGTAGAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGATTGTATTCTTCCTTGGCTCCATATGCATAACACTTGCCCTGTATGTCGCCATGAGTTACAAGGGATTGATAATAGTAATGCTAATTACAACTACTTTTTCCTCAATGAGAATGAGCAACAAGGGTTCATTGGTTTTGAGGAATTTGCAAGCAGCATTAATTGGATTTGGAGCCAACTGGCTTTGTTTAGGCCAATTCGCGCAATCCTAGATTGGACATTGTCCTTCTTTGATTTCCAACACAACAATGGTCGCAGTCATAGTAGAAGTAGTTCTTGGTGGCGAGCATTGCTCATTTCACAGCTTTGTCTATGA 948 0.3871 MSLTGRPRVVVNGVRRMRTFHYFWCLNCQRTVRIPSTITMHASICPYCFHQLRYELDVSRTRLSSNNQLMHNLAFILDPSLRRQNQNNTTPQWETEHEHDQNQNQNQNPQTWITLRFVRPTTPPSPISPPQQNLDPQPNNIPSLDEFFDGMIENNIRPGPPPASPSAIEALPMVKVTETQLSSDPNCPICKDEFEVDVEVRELPCKHFYHSDCILPWLHMHNTCPVCRHELQGIDNSNANYNYFFLNENEQQGFIGFEEFASSINWIWSQLALFRPIRAILDWTLSFFDFQHNNGRSHSRSSSWWRALLISQLCL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00080 315 CDD RING-H2_RNF126_like 187 228 - -
Car01g00080 315 Pfam Ring finger domain 186 228 IPR001841 -
Car01g00080 315 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Car01g00080 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 233 IPR013083 -
Car01g00080 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 305 - -
Car01g00080 315 MobiDBLite consensus disorder prediction 81 109 - -
Car01g00080 315 SUPERFAMILY RING/U-box 167 234 - -
Car01g00080 315 SMART ring_2 187 227 IPR001841 -
Car01g00080 315 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00080 Car-Chr1 653564 655006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00080 1 295 C3H Transcription Factor Family AT1G68180 32.432 2.37e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00080 K11982 - gmx:100793656 358.607